RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CYBAP13498 195 aa11.43□□□□□ -0.58
COL6A3-206ENST00000409809 CEACAM6P40199 344 aa11.43□□□□□ -0.58
COL6A3-206ENST00000409809 TMEM52BQ4KMG9 183 aa11.43□□□□□ -0.58
COL6A3-206ENST00000409809 GMLQ99445 158 aa11.43□□□□□ -0.58
COL6A3-206ENST00000409809 FBXL14Q8N1E6 418 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 SCCPDHQ8NBX0 429 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 OR1N1Q8NGS0 311 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 INSM2Q96T92 566 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-206ENST00000409809 DUSP13Q9UII6 198 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 FAM157CP0CG43 387 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 EDN3P14138 238 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 MLF2Q15773 248 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-206ENST00000409809 ZNF880Q6PDB4 577 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 UBALD2Q8IYN6 164 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 NT5CQ8TCD5 201 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 RBKSQ9H477 322 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 A0A0A6YYD5 115 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 ARF6P62330 175 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 IBA57Q5T440 356 aaKnown RBP11.42□□□□□ -0.58
COL6A3-206ENST00000409809 MARCH3Q86UD3 253 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 POC1AQ8NBT0 407 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 FBLIM1Q8WUP2 373 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 QTRT1Q9BXR0 403 aaKnown RBP11.42□□□□□ -0.58
COL6A3-206ENST00000409809 IL23AQ9NPF7 189 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 GLI4P10075 376 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 HERPUD1Q15011 391 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 IMMP2LQ96T52 175 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 FNDC7Q5VTL7 733 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 SLC36A1Q7Z2H8 476 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 C1orf174Q8IYL3 243 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 OR4X2Q8NGF9 303 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 RHNO1Q9BSD3 238 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 PPP1R3EQ9H7J1 279 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 LINC00869P0C866 280 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 LPAR6P43657 344 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 MICBQ29980 383 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 C10orf113Q5VZT2 155 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 ZFAND6Q6FIF0 208 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 OR2I1PQ8NGU4 316 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 MAP1LC3AQ9H492 121 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 ZNF407Q9C0G0 2248 aa11.42□□□□□ -0.58
COL6A3-206ENST00000409809 PMELP40967 661 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 RPS11P62280 158 aaKnown RBP eCLIP11.41□□□□□ -0.58
COL6A3-206ENST00000409809 BHLHE23Q8NDY6 225 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 HIST1H2BAQ96A08 127 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 OR51B4Q9Y5P0 310 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 F5H697 171 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 GCM2O75603 506 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-206ENST00000409809 CA7P43166 264 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 FZD5Q13467 585 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 ALKAL1Q6UXT8 129 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 C1QL4Q86Z23 238 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 BEND2Q8NDZ0 799 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 DOCK4Q8N1I0 1966 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 PSG5Q15238 335 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 RNPS1Q15287 305 aaKnown RBP11.41□□□□□ -0.58
COL6A3-206ENST00000409809 ZNF141Q15928 474 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 SSBP4Q9BWG4 385 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-206ENST00000409809 SPINK4O60575 86 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 KIR3DL2P43630 455 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 TNFSF10P50591 281 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 DLK2Q6UY11 383 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 PNKDQ8N490 385 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 THOC3Q96J01 351 aaKnown RBP11.41□□□□□ -0.58
COL6A3-206ENST00000409809 DDX60LQ5H9U9 1706 aaKnown RBP11.41□□□□□ -0.58
COL6A3-206ENST00000409809 H0Y980 276 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 ATP6V0CP27449 155 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 KCNS1Q96KK3 526 aa11.41□□□□□ -0.58
COL6A3-206ENST00000409809 CFDP00746 253 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-206ENST00000409809 ALOX12BO75342 701 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 CD38P28907 300 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 SRSF5Q13243 272 aaKnown RBP11.4□□□□□ -0.58
COL6A3-206ENST00000409809 ZFP64Q9NPA5 681 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 ASCL3Q9NQ33 180 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 B3GALT4O96024 378 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 PPYP01298 95 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 CXCL2P19875 107 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 CTAG1AP78358 180 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 DOCK3Q8IZD9 2030 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 TLNRD1Q9H1K6 362 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 S1PR2O95136 353 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 ROM1Q03395 351 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 TNFRSF9Q07011 255 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 SKP2Q13309 424 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 RBPMS2Q6ZRY4 209 aaKnown RBP11.4□□□□□ -0.58
COL6A3-206ENST00000409809 ARID2Q68CP9 1835 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 CADP27708 2225 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 UPK1AO00322 258 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 MPC1Q9Y5U8 109 aa11.4□□□□□ -0.58
COL6A3-206ENST00000409809 TMPRSS3P57727 454 aa11.4□□□□□ -0.59
COL6A3-206ENST00000409809 Q6AWC8 147 aa11.4□□□□□ -0.59
COL6A3-206ENST00000409809 DOK4Q8TEW6 326 aa11.4□□□□□ -0.59
COL6A3-206ENST00000409809 ERRFI1Q9UJM3 462 aaPredicted RBP11.4□□□□□ -0.59
COL6A3-206ENST00000409809 STRCQ7RTU9 1775 aa11.4□□□□□ -0.59
COL6A3-206ENST00000409809 CSN3P07498 182 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 FSTP19883 344 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 MYBPHQ13203 477 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 SP6Q3SY56 376 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 LINC01553A4QN01 128 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 OR2A4O95047 310 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms