RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PRAMEF6Q5VXH4 476 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 CMTM1Q8IZ96 169 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 ASB13Q8WXK3 278 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 NUDT16L1Q9BRJ7 211 aaKnown RBP11.43□□□□□ -0.58
VPS54-203ENST00000409558 KIAA1549Q9HCM3 1950 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 ZGRF1Q86YA3 2104 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 CCL20P78556 96 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 EWSR1Q01844 656 aaKnown RBP eCLIP11.43□□□□□ -0.58
VPS54-203ENST00000409558 SRSF4Q08170 494 aaKnown RBP11.43□□□□□ -0.58
VPS54-203ENST00000409558 OR8G2PQ6IF36 304 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 FDCSPQ8NFU4 85 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 MOB3AQ96BX8 217 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 RSRP1Q9BUV0 290 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 FAM212BQ9NTI7 297 aaPredicted RBP11.43□□□□□ -0.58
VPS54-203ENST00000409558 PCSK5Q92824 1860 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 SPTBN1Q01082 2364 aaKnown RBP11.43□□□□□ -0.58
VPS54-203ENST00000409558 A0A0G2JRQ6 117 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 IGSF23A1L1A6 192 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 C19orf67A6NJJ6 358 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 RPL36A-HNRNPH2H7BZ11 118 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 EIF5AP63241 154 aaKnown RBP11.43□□□□□ -0.58
VPS54-203ENST00000409558 ZNF816Q0VGE8 651 aaPredicted RBP11.43□□□□□ -0.58
VPS54-203ENST00000409558 TRIP6Q15654 476 aaKnown RBP11.43□□□□□ -0.58
VPS54-203ENST00000409558 DEFB109BQ30KR1 87 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 CEACAM21Q3KPI0 293 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 OR2C3Q8N628 320 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 MED9Q9NWA0 146 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 METTL15P1P0C7V9 234 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 DTYMKP23919 212 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 HOXA6P31267 233 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 DYNLT3P51808 116 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 FGF8P55075 233 aaPredicted RBP11.42□□□□□ -0.58
VPS54-203ENST00000409558 RTL6Q6ICC9 239 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 ADAM5Q6NVV9 412 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 SLC25A40Q8TBP6 338 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 POM121L2Q96KW2 1035 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 ANAPC10Q9UM13 185 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 KRASP01116 189 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 ELLP55199 621 aaPredicted RBP11.42□□□□□ -0.58
VPS54-203ENST00000409558 USB1Q9BQ65 265 aaKnown RBP11.42□□□□□ -0.58
VPS54-203ENST00000409558 TRBV6-7A0A0A0MS04 114 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 SNAPINO95295 136 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 GABRA2P47869 451 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 GUK1Q16774 197 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 VWA1Q6PCB0 445 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 LCN15Q6UWW0 184 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 DCTN5Q9BTE1 182 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 TMEM9BQ9NQ34 198 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 HSF4Q9ULV5 492 aa11.42□□□□□ -0.58
VPS54-203ENST00000409558 TLN1Q9Y490 2541 aaKnown RBP11.42□□□□□ -0.58
VPS54-203ENST00000409558 FGF16O43320 207 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 CRYBA1P05813 215 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 AESQ08117 197 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 DAZAP2Q15038 168 aaPredicted RBP11.41□□□□□ -0.58
VPS54-203ENST00000409558 SURF2Q15527 256 aaPredicted RBP11.41□□□□□ -0.58
VPS54-203ENST00000409558 SPANXN5Q5MJ07 72 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 SSX9Q7RTT3 188 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 THNSL2Q86YJ6 484 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 RXFP4Q8TDU9 374 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 GLS2Q9UI32 602 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 KLF13Q9Y2Y9 288 aaPredicted RBP11.41□□□□□ -0.58
VPS54-203ENST00000409558 hCG_1809904A0A1W2PP81 198 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 A0A1W2PR64 198 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 A0A1W2PRV1 198 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 SPP1P10451 314 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 HOXC12P31275 282 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 FGF12P61328 243 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 TMEM42Q69YG0 159 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 FAM122CQ6P4D5 195 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 C10orf35Q96D05 121 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 Q9N2K0 584 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 PQLC2LA1A4F0 135 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 ATP6V0CP27449 155 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 CEACAM6P40199 344 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 FER1L6-AS2Q96M78 137 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 RSG1Q9BU20 258 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 C19orf12Q9NSK7 152 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 DLL3Q9NYJ7 618 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 IGF2RP11717 2491 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 TRAV24A0A0B4J272 114 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 A0A1W2PPE2 198 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 KIAA1324LA8MWY0 1029 aaPredicted RBP11.41□□□□□ -0.58
VPS54-203ENST00000409558 DNPH1O43598 174 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 TMEM50AO95807 157 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 GNG3P63215 75 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 CLEC12BQ2HXU8 276 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 FAM24BQ8N5W8 94 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 CACNG5Q9UF02 275 aa11.41□□□□□ -0.58
VPS54-203ENST00000409558 ZFP92A6NM28 416 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 ZNF724A8MTY0 619 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 OR5T1Q8NG75 326 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 PRDM14Q9GZV8 571 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 RCC2Q9P258 522 aaKnown RBP11.4□□□□□ -0.58
VPS54-203ENST00000409558 DNAJB11Q9UBS4 358 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 RAB19A4D1S5 217 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 CEACAM18A8MTB9 384 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 ZNF727A8MUV8 499 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 UMAD1C9J7I0 102 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 DEFA4P12838 97 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 IL15RAQ13261 267 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms