RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CD276Q5ZPR3 534 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 SLC35E4Q6ICL7 350 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 MZT2AQ6P582 158 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 ZNF880Q6PDB4 577 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 ZNF497Q6ZNH5 498 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 TCF23Q7RTU1 214 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 RTN4RL2Q86UN3 420 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 CMTM4Q8IZR5 234 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 SAMD12Q8N8I0 201 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 ASCC1Q8N9N2 400 aaKnown RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 PPP1R35Q8TAP8 253 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 PLPPR1Q8TBJ4 325 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 CORO2AQ92828 525 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 PECRQ9BY49 303 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 PPA2Q9H2U2 334 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 UNKLQ9H9P5 680 aaKnown RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 MBNL3Q9NUK0 354 aaKnown RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 OPN4Q9UHM6 478 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 IGHV2-70DA0A0C4DH43 119 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 A0A0G2JMP0 313 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 A0A0X1KG70 313 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 KIR2DS1A0A191URI9 304 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 SERPINE3A8MV23 424 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 MCRIP1C9JLW8 97 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 RBP4P02753 201 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 EIF4EP06730 217 aaKnown RBP7.54□□□□□ -1.2
VPS53-203ENST00000401468 LIPFP07098 398 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 PPIAL4GP0DN37 164 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 HIST1H1DP16402 221 aaKnown RBP7.54□□□□□ -1.2
VPS53-203ENST00000401468 ELK1P19419 428 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 CDK2P24941 298 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 VEGFCP49767 419 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 DLX6P56179 175 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 P2RX3P56373 397 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 PAX8Q06710 450 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 ARL6IP1Q15041 203 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 GRK1Q15835 563 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 PAN3Q58A45 887 aaKnown RBP7.54□□□□□ -1.2
VPS53-203ENST00000401468 C12orf54Q6X4T0 127 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 Q6ZPA2 131 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 LINC00299Q6ZSB3 139 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 C1orf122Q6ZSJ8 110 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 BTN2A1Q7KYR7 527 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 GDPD3Q7L5L3 318 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 C6orf201Q7Z4U5 140 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 ZNF554Q86TJ5 538 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 C11orf42Q8N5U0 333 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 KIR3DL3Q8N743 410 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 TMEM185AQ8NFB2 350 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 OR4M2Q8NGB6 313 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 RAB3CQ96E17 227 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 ARHGAP5-AS1Q96IT6 56 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 CYYR1Q96J86 154 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 SULT4A1Q9BR01 284 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 CHST6Q9GZX3 395 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 ATG5Q9H1Y0 275 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 MMP27Q9H306 513 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 TNFRSF19Q9NS68 423 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 C19orf12Q9NSK7 152 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 INSIG2Q9Y5U4 225 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 PEX16Q9Y5Y5 336 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 LINC00312Q9Y6C7 94 aa7.54□□□□□ -1.2
VPS53-203ENST00000401468 ODAMA1E959 279 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 FUOMA2VDF0 154 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 C17orf98A8MV24 154 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 CTDSP2O14595 271 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 ENSAO43768 121 aaKnown RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 HPGDSO60760 199 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 MT-ND4P03905 459 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 MMP9P14780 707 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 GLIPR1P48060 266 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 RPL31P62899 125 aaKnown RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 PRB3Q04118 309 aaPredicted RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 AESQ08117 197 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 ATXN7L3Q14CW9 347 aaPredicted RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 SRSF7Q16629 238 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS53-203ENST00000401468 PNLIPRP3Q17RR3 467 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 CNPY1Q3B7I2 92 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 KLF17Q5JT82 389 aaPredicted RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 ATAD3CQ5T2N8 411 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 HACD4Q5VWC8 232 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 TMEM200BQ69YZ2 307 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 METAP1DQ6UB28 335 aaPredicted RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 Q6ZS49 121 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 Q6ZTK2 550 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 LAX1Q8IWV1 398 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 BPIFB2Q8N4F0 458 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 SIGLECL1Q8N7X8 197 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 MCFD2Q8NI22 146 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 DYRK2Q92630 601 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 S100A16Q96FQ6 103 aaKnown RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 NEDD4LQ96PU5 975 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 SOSTQ9BQB4 213 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 DCUN1D5Q9BTE7 237 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 FAAP24Q9BTP7 215 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 RIMS4Q9H426 269 aaPredicted RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 PLEKHJ1Q9NW61 149 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 COMMD3Q9UBI1 195 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 ZNF69Q9UC07 566 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 AK3Q9UIJ7 227 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms