RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 BCAT2O15382 392 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 DHRS3O75911 302 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 NDUFB4O95168 129 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 CBLN1P23435 193 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 MSX1P28360 303 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 CDC34P49427 236 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM187Q14656 261 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 FDX2Q6P4F2 183 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 MENTQ9BUN1 341 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 NRXN2Q9P2S2 1712 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 IGLV1-36A0A0B4J1U3 117 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 IGHV3-64DA0A0J9YX35 117 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 LOC102725191A0A1B0GVB3 256 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 POU2F2P09086 479 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 NTSR1P30989 418 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 BRS3P32247 399 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 MPLP40238 635 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 SPINK9Q5DT21 86 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 MRPL54Q6P161 138 aaKnown RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 C16orf47Q6ZP98 133 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 OR2V1Q8NHB1 315 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 KLHDC7BQ96G42 594 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 LAMTOR2Q9Y2Q5 125 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 LOC285556D6RIA3 1793 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 TRBV24-1A0A075B6N3 115 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 SYNGR4O95473 234 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 BGLAPP02818 100 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 ISG15P05161 165 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 KLF3P57682 345 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 CALHM1Q8IU99 346 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 GCNT2Q8N0V5 402 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 OR10V1Q8NGI7 309 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 CDCA3Q99618 268 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM106BQ9NUM4 274 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 ZFP30Q9Y2G7 519 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 ICE1Q9Y2F5 2266 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 KIR2DS5A0A0G2JLQ3 304 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 A0A0G2JNG1 304 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 OTOL1A6NHN0 477 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 FBLL1A6NHQ2 334 aaKnown RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 IFITM10A6NMD0 228 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 KIR2DS3K7RE56 304 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 KBTBD11O94819 623 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 SRP14P37108 136 aaKnown RBP8.12□□□□□ -1.11
COL28A1-201ENST00000399429 EGR4Q05215 589 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 FOXF1Q12946 379 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 KIR2DS5Q14953 304 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 SHBQ15464 509 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 SHHQ15465 462 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 C1QL2Q7Z5L3 287 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM256Q8N2U0 113 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM170AQ8WVE7 144 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 P2RX4Q99571 388 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 FAM60AQ9NP50 221 aa8.12□□□□□ -1.11
COL28A1-201ENST00000399429 LTBP4Q8N2S1 1624 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 G3V3Y1 287 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 M0R2Z0 102 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 CD55P08174 381 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 SPINK2P20155 84 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 IL11P20809 199 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 HGFACQ04756 655 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 PLP2Q04941 152 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 MESP2Q0VG99 397 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 OR5B3Q8NH48 314 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 BCL2L2Q92843 193 aaPredicted RBP8.11□□□□□ -1.11
COL28A1-201ENST00000399429 RCC1LQ96I51 464 aaKnown RBP8.11□□□□□ -1.11
COL28A1-201ENST00000399429 ALKBH4Q9NXW9 302 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 SNRNP200O75643 2136 aaKnown RBP8.11□□□□□ -1.11
COL28A1-201ENST00000399429 CA11O75493 328 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 CTXN2P0C2S0 81 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 TCF23Q7RTU1 214 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 D2HGDHQ8N465 521 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 C8orf44Q96CB5 159 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 MRPL18Q9H0U6 180 aaKnown RBP8.11□□□□□ -1.11
COL28A1-201ENST00000399429 PLXNA1Q9UIW2 1896 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 PTPRDP23468 1912 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 IGHV3-15A0A0B4J1V0 119 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 PDCD6O75340 191 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 IGFBP3P17936 291 aaPredicted RBP8.11□□□□□ -1.11
COL28A1-201ENST00000399429 TNFSF4P23510 183 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 ZNF816Q0VGE8 651 aaPredicted RBP8.11□□□□□ -1.11
COL28A1-201ENST00000399429 UNQ5815/PRO19632Q6UWF5 114 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 OR2D3Q8NGH3 330 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 SLC17A4Q9Y2C5 497 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 SELENOKQ9Y6D0 94 aa8.11□□□□□ -1.11
COL28A1-201ENST00000399429 ZNF217O75362 1048 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 DNLZQ5SXM8 178 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 H2BFWTQ7Z2G1 175 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 MOB3AQ96BX8 217 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 TBX21Q9UL17 535 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 PTRH2Q9Y3E5 179 aaKnown RBP8.1□□□□□ -1.11
COL28A1-201ENST00000399429 COL11A2P13942 1736 aaPredicted RBP8.1□□□□□ -1.11
COL28A1-201ENST00000399429 IGHV3-9P01782 118 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 CAMPP49913 170 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 CATR1Q13166 79 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 EIF3IQ13347 325 aaKnown RBP8.1□□□□□ -1.11
COL28A1-201ENST00000399429 GABRA6Q16445 453 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 FHL5Q5TD97 284 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 LHFPL2Q6ZUX7 228 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 RABEPKQ7Z6M1 372 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms