RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 RGS7BPQ6MZT1 257 aaPredicted RBP9.44□□□□□ -0.9
TCOF1-203ENST00000394269 ZNF474Q6S9Z5 364 aaPredicted RBP9.44□□□□□ -0.9
TCOF1-203ENST00000394269 SAXO1Q8IYX7 474 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 CMTM1Q8IZ96 169 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 LGI3Q8N145 548 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 PIK3IP1Q96FE7 263 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 SESN1Q9Y6P5 492 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.44□□□□□ -0.9
TCOF1-203ENST00000394269 MED19A0JLT2 244 aaPredicted RBP9.44□□□□□ -0.9
TCOF1-203ENST00000394269 LRP5LA4QPB2 252 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 NKX2-6A6NCS4 301 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 OR5H1A6NKK0 313 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 SNAPC5O75971 98 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 OR2B11Q5JQS5 317 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 LIAT1Q6ZQX7 453 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 Q6ZS92 163 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 BEND4Q6ZU67 534 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 CCDC36Q8IYA8 594 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 LINC00052Q96N35 136 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 CNTNAP3BQ96NU0 1288 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 CNTNAP3Q9BZ76 1288 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 RAXQ9Y2V3 346 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 FAM215AQ9Y5M1 114 aa9.44□□□□□ -0.9
TCOF1-203ENST00000394269 IGHV2OR16-5A0A0B4J2B6 119 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 A0A1B0GV50 99 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 NUPL2O15504 423 aaKnown RBP9.43□□□□□ -0.9
TCOF1-203ENST00000394269 IGKV3-15P01624 115 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 MBPP02686 304 aaPredicted RBP9.43□□□□□ -0.9
TCOF1-203ENST00000394269 BAP18Q8IXM2 172 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 OR8G5Q8NG78 346 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 DHRS9Q9BPW9 319 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 KIF25Q9UIL4 384 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 DEFB108AA8MXU0 73 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 B8ZZF3 427 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 PSPNO60542 156 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 CEACAM4O75871 244 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 TUSC2O75896 110 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 CRYAAP02489 173 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 APOC3P02656 99 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 TPT1P13693 172 aaKnown RBP9.43□□□□□ -0.9
TCOF1-203ENST00000394269 SRSF4Q08170 494 aaKnown RBP9.43□□□□□ -0.9
TCOF1-203ENST00000394269 PXDC1Q5TGL8 231 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 TAF9BQ9HBM6 251 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 CSPG4Q6UVK1 2322 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 IGHV3-43A0A0B4J1X8 118 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 C1QTNF9BB2RNN3 333 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 HAND1O96004 215 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 FAM87AP0C7U9 286 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 C1QTNF9P0C862 333 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 IGHV3-43DP0DP04 118 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 CEACAM6P40199 344 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 ZNF345Q14585 488 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 Q6ZR03 302 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 DEFB108BQ8NET1 73 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 PRRX2Q99811 253 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 HRH4Q9H3N8 390 aa9.43□□□□□ -0.9
TCOF1-203ENST00000394269 IGHV3OR15-7A0A075B7D8 119 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 GPR31O00270 319 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 CRYABP02511 175 aaKnown RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 TMEM33P57088 247 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 POLR2GP62487 172 aaKnown RBP eCLIP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 FAM201AQ5SY85 155 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 C22orf34Q6ZV56 151 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 ZNF808Q8N4W9 903 aaPredicted RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 MRGPRDQ8TDS7 321 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 BSCL2Q96G97 398 aaPredicted RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 PKIBQ9C010 78 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 MS4A7Q9GZW8 240 aaPredicted RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 DNAJB11Q9UBS4 358 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 PTPRBP23467 1997 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 ZNF705EA8MWA4 302 aaPredicted RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 ADAM20O43506 726 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 SERPINE2P07093 398 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 OR3A1P47881 315 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 CLINT1Q14677 625 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 P2RY6Q15077 328 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 TUSC1Q2TAM9 212 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 PRR30Q53SZ7 412 aaPredicted RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 TMEM217Q8N7C4 229 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 MSI2Q96DH6 328 aaKnown RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 DCTN5Q9BTE1 182 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 SUCNR1Q9BXA5 334 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 DNTTIP1Q9H147 329 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 RCC2Q9P258 522 aaKnown RBP9.42□□□□□ -0.9
TCOF1-203ENST00000394269 METRNQ9UJH8 293 aa9.42□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A10PA6NDY2 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A18PA6NE21 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A16PA6NEW6 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A20PA6NIJ5 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A8PA6NJQ4 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A7PA6NKC0 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A22PA8MWA6 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A12PA8MX19 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A5PA8MXJ8 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A23PA8MXZ1 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 IQCF6A8MYZ5 107 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 ATP6V1G2-DDX39BF2Z307 99 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 CDK2AP1O14519 115 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A15PP0C7V4 464 aa9.41□□□□□ -0.9
TCOF1-203ENST00000394269 FAM90A13PP0C7W8 464 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms