RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FAM90A13PP0C7W8 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A14PP0C7W9 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A24PP0C7X0 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 OR5H8P0DN80 308 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 PGAM2P15259 253 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 BCL3P20749 454 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FUT3P21217 361 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 PMELP40967 661 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 TMEM33P57088 247 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 RAB14P61106 215 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 SLC9A3R2Q15599 337 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 LRRC37A5PQ49AS3 106 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 NHLRC3Q5JS37 347 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 ZNF660Q6AZW8 331 aaPredicted RBP8.58□□□□□ -1.04
VPS53-202ENST00000389040 ELP2Q6IA86 826 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 SPNS3Q6ZMD2 512 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 OR5A2Q8NGI9 324 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 COQ8AQ8NI60 647 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 RDH5Q92781 318 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 HIST1H2AAQ96QV6 131 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 SAP30LQ9HAJ7 183 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 C12orf4Q9NQ89 552 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 NECAP2Q9NVZ3 263 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 AUP1Q9Y679 476 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 PLCE1Q9P212 2302 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 NOTCH2Q04721 2471 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 A0A0D9SG52 128 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 C13orf42A0A1B0GVH6 325 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 C5orf51A6NDU8 294 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 ZSCAN5BA6NJL1 495 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 DAOP14920 347 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 RPS2P15880 293 aaKnown RBP8.57□□□□□ -1.04
VPS53-202ENST00000389040 CD200P41217 278 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 AP2S1P53680 142 aaPredicted RBP8.57□□□□□ -1.04
VPS53-202ENST00000389040 TNFAIP6P98066 277 aaPredicted RBP8.57□□□□□ -1.04
VPS53-202ENST00000389040 ZNF345Q14585 488 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 PDCD1Q15116 288 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 ANKRD55Q3KP44 614 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 Q6ZR03 302 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 MKXQ8IYA7 352 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 BATF2Q8N1L9 274 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 BHLHE23Q8NDY6 225 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 OR2Z1Q8NG97 314 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 OR5P3Q8WZ94 311 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 PERPQ96FX8 193 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 NMES1Q9C002 83 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 CHODLQ9H9P2 273 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 MSL2Q9HCI7 577 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 RAB18Q9NP72 206 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 RDH8Q9NYR8 311 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 TNFSF18Q9UNG2 199 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 SPG11Q96JI7 2443 aa8.57□□□□□ -1.04
VPS53-202ENST00000389040 PDZD2O15018 2839 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 TMEM210A6NLX4 147 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 LEUTXA8MZ59 168 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 SPRY3O43610 288 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 B3GALNT1O75752 331 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 KNG1P01042 644 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 CTSDP07339 412 aaPredicted RBP8.56□□□□□ -1.04
VPS53-202ENST00000389040 PDLIM4P50479 330 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 FGF12P61328 243 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 CCL8P80075 99 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 OR8G1Q15617 311 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 HFEQ30201 348 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 ALKBH6Q3KRA9 238 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 FAM76BQ5HYJ3 339 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 CLEC2AQ6UVW9 174 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 THAP6Q8TBB0 222 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 PCNPQ8WW12 178 aaKnown RBP8.56□□□□□ -1.04
VPS53-202ENST00000389040 ZNF286AQ9HBT8 521 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 PRR13Q9NZ81 148 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 MTCH1Q9NZJ7 389 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 SETXQ7Z333 2677 aaKnown RBP8.56□□□□□ -1.04
VPS53-202ENST00000389040 OR5B21A6NL26 309 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 F8VVB4 439 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 F8VWA3 439 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 TRAPPC2LH3BP13 241 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 TPD52L2O43399 206 aaKnown RBP8.56□□□□□ -1.04
VPS53-202ENST00000389040 LILRA1O75019 489 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 OR2F2O95006 317 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 SLC25A16P16260 332 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 CA6P23280 308 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 CYCSP99999 105 aaKnown RBP8.56□□□□□ -1.04
VPS53-202ENST00000389040 OR2F1Q13607 317 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 ESCO2Q56NI9 601 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 DHRS11Q6UWP2 260 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 SLC51BQ86UW2 128 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 KCNRGQ8N5I3 272 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 Q8TCH9 128 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 MICU1Q9BPX6 476 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 ADAT1Q9BUB4 502 aaKnown RBP8.56□□□□□ -1.04
VPS53-202ENST00000389040 CHMP1AQ9HD42 196 aaPredicted RBP8.56□□□□□ -1.04
VPS53-202ENST00000389040 KIF25Q9UIL4 384 aa8.56□□□□□ -1.04
VPS53-202ENST00000389040 IGHV1-69-2A0A0G2JMI3 117 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 LRRC30A6NM36 301 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 MLNRO43193 412 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 ADAP1O75689 374 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 IFNA2P01563 188 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 PSMB6P28072 239 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 CFHR2P36980 270 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms