RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 EFNB2P52799 333 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ATP5G2Q06055 141 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 DCAF12L2Q5VW00 463 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 C10orf113Q5VZT2 155 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 C5orf46Q6UWT4 87 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 GON7Q9BXV9 100 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SNHG12Q9BXW3 62 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 IDI2-AS1Q9NZ38 188 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 MEGF6O75095 1541 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3-49A0A0A0MS15 119 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 A0A1W2PPI3 338 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ANKRD20A5PA0PJZ0 165 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 AKR7A2O43488 359 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CACNG3O60359 315 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 KBTBD11O94819 623 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 APCSP02743 223 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CRHP06850 196 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CEACAM1P13688 526 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ADMP35318 185 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 KIR2DS2P43631 304 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 RELAQ04206 551 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 EMX2Q04743 252 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 FAM78BQ5VT40 261 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CCDC144NLQ6NUI1 221 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 C1orf174Q8IYL3 243 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SPICQ8N5J4 248 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 AMER3Q8N944 861 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 OR52N4Q8NGI2 321 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 C8orf46Q8TAG6 207 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 NUDCD2Q8WVJ2 157 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 RAB24Q969Q5 203 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 MARC2Q969Z3 335 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ABHD14BQ96IU4 210 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 FAM206AQ9NX38 181 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 NTNG1Q9Y2I2 539 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 NBASA2RRP1 2371 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 A0A1B0GX78 115 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 RBFOX3A6NFN3 312 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 H0YGG7 62 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 NGFP01138 241 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ACAA1P09110 424 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 TRGC1P0CF51 173 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 BHLHA15Q7RTS1 189 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 PFN4Q8NHR9 129 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A40Q8TBP6 338 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 OXGR1Q96P68 337 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 OPALINQ96PE5 141 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A21Q9BQT8 299 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 PXMP4Q9Y6I8 212 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CHST1O43916 411 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CXCL13O43927 109 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 RPL35AP18077 110 aaKnown RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 GZMHP20718 246 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 RPS4Y1P22090 263 aaKnown RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ADRA1AP35348 466 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ABHD15Q6UXT9 468 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 GAPTQ8N292 157 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 NANOGP1Q8N7R0 232 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 OR51E1Q8TCB6 317 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SP7Q8TDD2 431 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ADAMTS16Q8TE57 1224 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 C7orf43Q8WVR3 580 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 RCC1LQ96I51 464 aaKnown RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CDX2Q99626 313 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 EMCNQ9ULC0 261 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SCN5AQ14524 2016 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ABCA9Q8IUA7 1624 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ROBO1Q9Y6N7 1651 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 A0A1W2PQM1 296 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ZAR1LA6NP61 321 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ADARB2-AS1A8MUL3 147 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 H3BTX0 84 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CCL2P13500 99 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SELLP14151 372 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 GABRB3P28472 473 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CA5AP35218 305 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 TNFSF10P50591 281 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 GP2P55259 537 aaKnown RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SPCS2Q15005 226 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 UNQ5815/PRO19632Q6UWF5 114 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 OVCH2Q7RTZ1 564 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CASP8AP2Q9UKL3 1982 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 TRAV9-2A0A087WT02 112 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 A0A0A6YYD4 124 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 MBLAC1A4D2B0 266 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ASPDHA6ND91 283 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 J3KTA2 159 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 GDF9O60383 454 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF253O75346 499 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 JTBO76095 146 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SMIM13P0DJ93 91 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 MMP11P24347 488 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 TRIP6Q15654 476 aaKnown RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 KLHDC8BQ8IXV7 354 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 OR52I1Q8NGK6 324 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ALKBH3Q96Q83 286 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 C1QTNF2Q9BXJ5 285 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 VWDEQ8N2E2 1590 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3-35A0A0C4DH35 117 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 PAX4O43316 350 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms