RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 OR8G5Q8NG78 346 aa11.78□□□□□ -0.52
USP49-201ENST00000373006 TMEM37Q8WXS4 190 aa11.78□□□□□ -0.52
USP49-201ENST00000373006 TMEM54Q969K7 222 aa11.78□□□□□ -0.52
USP49-201ENST00000373006 SPACA9Q96E40 222 aaPredicted RBP11.78□□□□□ -0.52
USP49-201ENST00000373006 CABLES2Q9BTV7 478 aa11.78□□□□□ -0.52
USP49-201ENST00000373006 CCL28Q9NRJ3 127 aa11.78□□□□□ -0.52
USP49-201ENST00000373006 ZNF407Q9C0G0 2248 aa11.78□□□□□ -0.52
USP49-201ENST00000373006 CLDN34H7C241 214 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 TCF21O43680 179 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 CD55P08174 381 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 B4GALT1P15291 398 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 SPINK2P20155 84 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 HIST1H3AP68431 136 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 SLC10A1Q14973 349 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 PLCXD3Q63HM9 321 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 TMEM56Q96MV1 263 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 SPIN2AQ99865 258 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 SPIN2BQ9BPZ2 258 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 LRFN1Q9P244 771 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 TMEM56-RWDD3S4R434 201 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 MUC3AQ02505 3323 aa11.77□□□□□ -0.52
USP49-201ENST00000373006 IGLV3-32A0A0A0MS00 114 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 LOC102723971A0A1B0GUV8 181 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 IDH3GP51553 393 aaPredicted RBP11.77□□□□□ -0.53
USP49-201ENST00000373006 ID3Q02535 119 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 ZNF92Q03936 586 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 RNF151Q2KHN1 245 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 LHFPL2Q6ZUX7 228 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 FAM185AQ8N0U4 392 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 OR13D1Q8NGV5 346 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 M1APQ8TC57 530 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 RPRMQ9NS64 109 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 LOC102725191A0A1B0GVB3 256 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 PIAS2O75928 621 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 GZMBP10144 247 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 CRYGSP22914 178 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 PAX9P55771 341 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 TAS2R30P59541 319 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 Q6ZSR3 168 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 MAML2Q8IZL2 1156 aaPredicted RBP11.77□□□□□ -0.53
USP49-201ENST00000373006 PLPPR1Q8TBJ4 325 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 CCDC74BQ96LY2 380 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 HS3ST6Q96QI5 342 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 ATP5SQ99766 215 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 NDUFAF3Q9BU61 184 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 GPR87Q9BY21 358 aa11.77□□□□□ -0.53
USP49-201ENST00000373006 PI4KAP42356 2102 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 A0A1W2PR80 420 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 TNFSF11O14788 317 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 NTF4P34130 210 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 RBM11P57052 281 aaKnown RBP11.76□□□□□ -0.53
USP49-201ENST00000373006 MRPS34P82930 218 aaKnown RBP11.76□□□□□ -0.53
USP49-201ENST00000373006 FOXO1Q12778 655 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 PMS2P11Q13670 270 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 DAZAP2Q15038 168 aaPredicted RBP11.76□□□□□ -0.53
USP49-201ENST00000373006 FAM27BQ5VT28 67 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 ZIC4Q8N9L1 334 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 ALKBH3Q96Q83 286 aaPredicted RBP11.76□□□□□ -0.53
USP49-201ENST00000373006 CHCHD2Q9Y6H1 151 aaPredicted RBP11.76□□□□□ -0.53
USP49-201ENST00000373006 A0A0G2JRQ6 117 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 A0A1B0GU03 582 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 TGOLN2O43493 480 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 SYNGR3O43761 229 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 GDF9O60383 454 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 SCRG1O75711 98 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 HBE1P02100 147 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 TK1P04183 234 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 ZNF32P17041 273 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 SRPXP78539 464 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 COTL1Q14019 142 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 NMSQ5H8A3 153 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 TMEM211Q6ICI0 200 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 SSX7Q7RTT5 188 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 SLC25A45Q8N413 288 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 ZNF611Q8N823 705 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 SMRP1Q8NCR6 262 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 OR1F12Q8NHA8 337 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 EXTL1Q92935 676 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 DOCK7Q96N67 2140 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 TMEM208Q9BTX3 173 aa11.76□□□□□ -0.53
USP49-201ENST00000373006 DIDO1Q9BTC0 2240 aaKnown RBP11.76□□□□□ -0.53
USP49-201ENST00000373006 ZFP36L1Q07352 338 aaKnown RBP11.75□□□□□ -0.53
USP49-201ENST00000373006 CLN3Q13286 438 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 EXT1Q16394 746 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 ZNF787Q6DD87 383 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 ASCL4Q6XD76 172 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 SYT13Q7L8C5 426 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 TAAR3PQ9P1P4 343 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 IL36RNQ9UBH0 155 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 KNTC1P50748 2209 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 MARCH11A6NNE9 402 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 VDAC1P21796 283 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 WNT5AP41221 380 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 WDR5BQ86VZ2 330 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 OR10J5Q8NHC4 309 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 FGFBP3Q8TAT2 258 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 NEK7Q8TDX7 302 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 IGLV3-12A0A075B6K2 115 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 SLC22A20A6NK97 555 aa11.75□□□□□ -0.53
USP49-201ENST00000373006 CEBPZOSA8MTT3 80 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms