RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZNF787Q6DD87 383 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 A0A087WZY1 265 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 FUT6P51993 359 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 ZFP36L1Q07352 338 aaKnown RBP19.18■□□□□ 0.66
TRIM28-202ENST00000341753 M1APQ8TC57 530 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 NEK7Q8TDX7 302 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 CABLES2Q9BTV7 478 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 TCFL5Q9UL49 500 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 ZNF407Q9C0G0 2248 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 A0A1B0GU03 582 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 VDAC1P21796 283 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 PSG4Q00888 419 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 TMEM42Q69YG0 159 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 OR51H1Q8NH63 302 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 PILRBQ9UKJ0 227 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 BCL3P20749 454 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 ZNF726P1Q15940 193 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 FAM185AQ8N0U4 392 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 CDX2Q99626 313 aaPredicted RBP19.17■□□□□ 0.66
TRIM28-202ENST00000341753 DKKL1Q9UK85 242 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 RNF115Q9Y4L5 304 aa19.17■□□□□ 0.66
TRIM28-202ENST00000341753 hCG_38984A0A1B0GV85 526 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 ZIC3O60481 467 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 TUBG1P23258 451 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 BAXQ07812 192 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 MYPOPQ86VE0 399 aaPredicted RBP19.16■□□□□ 0.66
TRIM28-202ENST00000341753 WDR5BQ86VZ2 330 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 TP53I11O14683 189 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 BCL2P10415 239 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 IAPPP10997 89 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 OR8B8Q15620 311 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 PMS2CLQ68D20 193 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 MRPL14Q6P1L8 145 aaKnown RBP19.16■□□□□ 0.66
TRIM28-202ENST00000341753 STX12Q86Y82 276 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 ZNF295-AS1Q8N0V1 137 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 CYB5R3P00387 301 aaPredicted RBP19.16■□□□□ 0.66
TRIM28-202ENST00000341753 IFNA5P01569 189 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 SNRPCP09234 159 aaKnown RBP19.16■□□□□ 0.66
TRIM28-202ENST00000341753 CEACAM1P13688 526 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 GPR137CQ8N3F9 429 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 MISP3Q96FF7 219 aa19.16■□□□□ 0.66
TRIM28-202ENST00000341753 PTRH2Q9Y3E5 179 aaKnown RBP19.16■□□□□ 0.66
TRIM28-202ENST00000341753 IGKV1-6A0A0C4DH72 117 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 CEBPZOSA8MTT3 80 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 UCP1P25874 307 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 IL24Q13007 206 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 PCOLCEQ15113 449 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 PLSCR2Q9NRY7 297 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 FAM86C1Q9NVL1 165 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 CRIM1Q9NZV1 1036 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 GAB2Q9UQC2 676 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 SLC31A2O15432 143 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 IGHV3-9P01782 118 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 CLN3Q13286 438 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 OR4X1Q8NH49 305 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 Q9N2K0 584 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 TMEM38BQ9NVV0 291 aa19.15■□□□□ 0.66
TRIM28-202ENST00000341753 B4DEV8 164 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 VAMP5O95183 116 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 METTL15P1P0C7V9 234 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 LPAL2Q16609 132 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 BEND4Q6ZU67 534 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 GPR146Q96CH1 333 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 IL36GQ9NZH8 169 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 CHD3Q12873 2000 aaKnown RBP19.14■□□□□ 0.65
TRIM28-202ENST00000341753 UMODP07911 640 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 EDN3P14138 238 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 RND2P52198 227 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 ELLP55199 621 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-202ENST00000341753 Q3ZCU0 254 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 RNASE11Q8TAA1 199 aaKnown RBP19.14■□□□□ 0.65
TRIM28-202ENST00000341753 CA5BP1Q8WTZ4 195 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 WNT5BQ9H1J7 359 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 SDF2L1Q9HCN8 221 aa19.14■□□□□ 0.65
TRIM28-202ENST00000341753 OR6C6A6NF89 314 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 ST8SIA5O15466 376 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 LIFP15018 202 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 ARL16Q0P5N6 197 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 ADIRFQ15847 76 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 SLC23A3Q6PIS1 610 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 CISD1Q9NZ45 108 aaKnown RBP19.13■□□□□ 0.65
TRIM28-202ENST00000341753 C9J4A7 227 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 HMGB3O15347 200 aaKnown RBP19.13■□□□□ 0.65
TRIM28-202ENST00000341753 PGLYRP1O75594 196 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-202ENST00000341753 CCNOP22674 350 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 Q6ZRM9 215 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 H1FOOQ8IZA3 346 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-202ENST00000341753 PROK2Q9HC23 129 aa19.13■□□□□ 0.65
TRIM28-202ENST00000341753 C19orf25Q9UFG5 118 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-202ENST00000341753 ZNF816-ZNF321PA0A0X1KG74 233 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 FOSL1P15407 271 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 USF2Q15853 346 aaPredicted RBP19.12■□□□□ 0.65
TRIM28-202ENST00000341753 CEACAM16Q2WEN9 425 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 YRDCQ86U90 279 aaKnown RBP19.12■□□□□ 0.65
TRIM28-202ENST00000341753 POM121Q96HA1 1249 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 GPR87Q9BY21 358 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 CLEC18AA5D8T8 446 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 CST2P09228 141 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 PSG2P11465 335 aa19.12■□□□□ 0.65
TRIM28-202ENST00000341753 FKBP2P26885 142 aaKnown RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms