RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MPC1Q9Y5U8 109 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 KIR2DS1A0A191URI9 304 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 NFYBP25208 207 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 KIR2DS4P43632 304 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 NPBWR1P48145 328 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 UCP3P55916 312 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 ZNF154Q13106 437 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 KIR2DS1Q14954 304 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 SELENOHQ8IZQ5 122 aaKnown RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 PLPPR1Q8TBJ4 325 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 RCC2Q9P258 522 aaKnown RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 COL12A1Q99715 3063 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 OR5B21A6NL26 309 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 OR2H2O95918 312 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 TGFBR3Q03167 851 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 PSG7Q13046 419 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 TMEM182Q6ZP80 229 aaPredicted RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 C9orf106Q8NAJ2 232 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 LILRB1Q8NHL6 650 aaPredicted RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 GMPPAQ96IJ6 420 aaPredicted RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 PLEKHA2Q9HB19 425 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 MSL2Q9HCI7 577 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 GLS2Q9UI32 602 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 TMED3Q9Y3Q3 217 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 CEP295Q9C0D2 2601 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 ZNF14P17017 642 aaPredicted RBP8.78□□□□□ -1
LIMA1-201ENST00000341247 CAMLGP49069 296 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 PPT1P50897 306 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 PCSK4Q6UW60 755 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 ETV3LQ6ZN32 361 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 SAXO1Q8IYX7 474 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 CMTM1Q8IZ96 169 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 Q8NFD4 153 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 RTL8AQ9BWD3 113 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 RNF150Q9ULK6 438 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 PCNX1Q96RV3 2341 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 ATP6V1G2-DDX39BF2Z307 99 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 GPR137BO60478 399 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 WDR1O75083 606 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 PSG2P11465 335 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 SULT1A2P50226 295 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 VAMP2P63027 116 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 EWSR1Q01844 656 aaKnown RBP eCLIP8.78□□□□□ -1
LIMA1-201ENST00000341247 MIDNQ504T8 468 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 OR2B11Q5JQS5 317 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM214BQ7L5A3 538 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 SVBPQ8N300 66 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 TPRX1Q8N7U7 411 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 SMIM8Q96KF7 97 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 ASH1LQ9NR48 2969 aaKnown RBP8.78□□□□□ -1
LIMA1-201ENST00000341247 LRBAP50851 2863 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 BORCS7-ASMTA0A0B4J1R7 106 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 A0A0G2JRQ6 117 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 IGSF23A1L1A6 192 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A10PA6NDY2 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A18PA6NE21 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A16PA6NEW6 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A20PA6NIJ5 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A8PA6NJQ4 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A7PA6NKC0 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A22PA8MWA6 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A12PA8MX19 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A5PA8MXJ8 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A23PA8MXZ1 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 RNASEK-C17orf49H0YIS7 233 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 J3QT63 122 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 WRBO00258 174 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 PGLYRP1O75594 196 aaPredicted RBP8.78□□□□□ -1
LIMA1-201ENST00000341247 SFTA3P0C7M3 94 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A15PP0C7V4 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A13PP0C7W8 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A14PP0C7W9 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 FAM90A24PP0C7X0 464 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 HOXC12P31275 282 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 MRPL49Q13405 166 aaKnown RBP8.78□□□□□ -1
LIMA1-201ENST00000341247 OR8G1Q15617 311 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 PRAMEF6Q5VXH4 476 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 UQCC3Q6UW78 93 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 OR4D5Q8NGN0 318 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 RYDENQ9NUL5 291 aaKnown RBP8.78□□□□□ -1
LIMA1-201ENST00000341247 ACACAQ13085 2346 aa8.78□□□□□ -1
LIMA1-201ENST00000341247 TSPAN15O95858 294 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 KCNJ3P48549 501 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 UCP2P55851 309 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 IL24Q13007 206 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 HNF4GQ14541 408 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 OR2C3Q8N628 320 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 LRTM2Q8N967 370 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 AKR1E2Q96JD6 320 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 NRIP2Q9BQI9 281 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 ABHD14AQ9BUJ0 271 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 GP6Q9HCN6 339 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 PLSCR2Q9NRY7 297 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 POMT1Q9Y6A1 747 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 TACC2O95359 2948 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 TUSC2O75896 110 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 FAM213BQ8TBF2 198 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 KLF14Q8TD94 323 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-201ENST00000341247 PLPPR2Q96GM1 343 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 EIF5A2Q9GZV4 153 aaKnown RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms