RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 TRGV5A0A0B4J1U4 118 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 TRAV39A0A0B4J263 110 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 XKRY2A2RUG3 117 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 PSG2P11465 335 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 HNF1AP20823 631 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 UCP3P55916 312 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 GALNT14Q96FL9 552 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 TRIB1Q96RU8 372 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 ZDHHC11Q9H8X9 412 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 PLXND1Q9Y4D7 1925 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 DPPA3Q6W0C5 159 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 OR10A7Q8NGE5 316 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 SNX22Q96L94 193 aa12.77□□□□□ -0.37
TCOF1-201ENST00000323668 J3QT63 122 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 HSPB1P04792 205 aaKnown RBP12.76□□□□□ -0.37
TCOF1-201ENST00000323668 TIGITQ495A1 244 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 BIVMQ86UB2 503 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 NEIL1Q96FI4 390 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-201ENST00000323668 V9GYS6 101 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 HEATR5AQ86XA9 2040 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 GABRA4P48169 554 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 SRSF3P84103 164 aaKnown RBP12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM131CQ96AQ9 280 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 PLPPR2Q96GM1 343 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 CTDSP1Q9GZU7 261 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 TRIOBPQ9H2D6 2365 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 NAT2P11245 290 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 RND3P61587 244 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 RIPPLY2Q5TAB7 128 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 OR10S1Q8NGN2 331 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 LYRM2Q9NU23 88 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-201ENST00000323668 IGHV1-45A0A0A0MS14 117 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 IGKV1-9A0A0C4DH69 117 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 A0A1W2PR80 420 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A10PA6NDY2 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A18PA6NE21 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A16PA6NEW6 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A20PA6NIJ5 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A8PA6NJQ4 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A7PA6NKC0 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A22PA8MWA6 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A12PA8MX19 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A5PA8MXJ8 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A23PA8MXZ1 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A15PP0C7V4 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A13PP0C7W8 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A14PP0C7W9 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 FAM90A24PP0C7X0 464 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 RSPO4Q2I0M5 234 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-201ENST00000323668 DNASE2BQ8WZ79 361 aa12.76□□□□□ -0.37
TCOF1-201ENST00000323668 A0A1W2PQM1 296 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 PMS2P1A4D2B8 440 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 CHRNA7P36544 502 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 CDC34P49427 236 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-201ENST00000323668 CEACAM21Q3KPI0 293 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 RARRES2Q99969 163 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 HS3ST3B1Q9Y662 390 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 ATP23Q9Y6H3 246 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 PLXNA4Q9HCM2 1894 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 H0Y980 276 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 BCL2P10415 239 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 SERF2P84101 59 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 ZXDAP98168 799 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 IGFBP7Q16270 282 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 HFEQ30201 348 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 ZNF441Q8N8Z8 693 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 OR2T10Q8NGZ9 312 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 DAZAP1Q96EP5 407 aaKnown RBP12.75□□□□□ -0.37
TCOF1-201ENST00000323668 GPHA2Q96T91 129 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 ZNF319Q9P2F9 582 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 PSG11Q9UQ72 335 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 H0YL77 283 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 M0R1X1 148 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 KLK2P20151 261 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 ERVS71-1P61550 626 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 TRAPPC1Q9Y5R8 145 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 MPDZO75970 2070 aa12.75□□□□□ -0.37
TCOF1-201ENST00000323668 MEX3AA1L020 520 aaKnown RBP12.74□□□□□ -0.37
TCOF1-201ENST00000323668 CDIPTO14735 213 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 LY86O95711 162 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 PTBP3O95758 552 aaKnown RBP12.74□□□□□ -0.37
TCOF1-201ENST00000323668 PMELP40967 661 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 FAM89BQ8N5H3 189 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 TMEM54Q969K7 222 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 PACRGQ96M98 296 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-201ENST00000323668 ZNF488Q96MN9 340 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 Q9N2K0 584 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 TUBD1Q9UJT1 453 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 Q3ZCU0 254 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 NUFIP2Q7Z417 695 aaKnown RBP12.74□□□□□ -0.37
TCOF1-201ENST00000323668 SLC35E3Q7Z769 313 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 NFAM1Q8NET5 270 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-201ENST00000323668 CT55Q8WUE5 264 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 BORCS7Q96B45 105 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 SARAFQ96BY9 339 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 RSG1Q9BU20 258 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 MTCH1Q9NZJ7 389 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 PLXNA2O75051 1894 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 SLC25A53Q5H9E4 307 aa12.74□□□□□ -0.37
TCOF1-201ENST00000323668 LINC00596Q86U02 117 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms