RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 KCNE5Q9UJ90 142 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 PCM1Q15154 2024 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 SCN10AQ9Y5Y9 1956 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 FCGR3BO75015 233 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 ZXDAP98168 799 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 HFEQ30201 348 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 LAMTOR1Q6IAA8 161 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 SPAG17Q6Q759 2223 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 ZNF729A6NN14 1252 aaPredicted RBP10.1□□□□□ -0.79
VPS39-201ENST00000318006 LINC00587B1AMM8 73 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 RAB29O14966 203 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 CSN3P07498 182 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 MMP9P14780 707 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 VAX1Q5SQQ9 334 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 AQP10Q96PS8 301 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 TECRQ9NZ01 308 aaKnown RBP10.1□□□□□ -0.79
VPS39-201ENST00000318006 SF3B6Q9Y3B4 125 aaKnown RBP10.1□□□□□ -0.79
VPS39-201ENST00000318006 TRGV5A0A0B4J1U4 118 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 ST8SIA5O15466 376 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 RHBDL1O75783 438 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 ERGP11308 486 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 PRF1P14222 555 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 HINT1P49773 126 aaPredicted RBP10.09□□□□□ -0.79
VPS39-201ENST00000318006 GGTLC2Q14390 218 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 TMEM56Q96MV1 263 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 GNB4Q9HAV0 340 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 CBLN4Q9NTU7 201 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 HSPB8Q9UJY1 196 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 RALYQ9UKM9 306 aaKnown RBP10.09□□□□□ -0.79
VPS39-201ENST00000318006 APCSP02743 223 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 LGALS4P56470 323 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 NANOS3P60323 173 aaKnown RBP10.09□□□□□ -0.79
VPS39-201ENST00000318006 DSPPQ9NZW4 1301 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 TGIF2-C20orf24A0A0A6YYL0 155 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 GAGE10A6NGK3 116 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 MKRN2OSH3BPM6 223 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 SERF2P84101 59 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 SPATA45Q537H7 98 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 C1QL3Q5VWW1 255 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 GAPTQ8N292 157 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 TMEM52Q8NDY8 209 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 BOD1Q96IK1 185 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 MFRPQ9BY79 579 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 AAMDCQ9H7C9 122 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 MIA3Q5JRA6 1907 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 IGKV1-8A0A0C4DH67 115 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 A0A1B0GU03 582 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 FOXS1O43638 330 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 C1QCP02747 245 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 SRD5A2P31213 254 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 TRAT1Q6PIZ9 186 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 WDFY1Q8IWB7 410 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 DEFB108BQ8NET1 73 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 PTPMT1Q8WUK0 201 aaPredicted RBP10.09□□□□□ -0.79
VPS39-201ENST00000318006 TMEM230Q96A57 120 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 RASL10BQ96S79 203 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 RNF2Q99496 336 aa10.09□□□□□ -0.79
VPS39-201ENST00000318006 NPDC1Q9NQX5 325 aaPredicted RBP10.09□□□□□ -0.79
VPS39-201ENST00000318006 CARHSP1Q9Y2V2 147 aaKnown RBP10.09□□□□□ -0.79
VPS39-201ENST00000318006 TRAV17A0A0B4J275 112 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 LRRC3CA6NJW4 275 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 KLK2P20151 261 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 RPL11P62913 178 aaKnown RBP10.08□□□□□ -0.8
VPS39-201ENST00000318006 UBE2L3P68036 154 aaKnown RBP10.08□□□□□ -0.8
VPS39-201ENST00000318006 CPEB3Q8NE35 698 aaKnown RBP10.08□□□□□ -0.8
VPS39-201ENST00000318006 OR1L4Q8NGR5 311 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 OR2Y1Q8NGV0 311 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 OR2T6Q8NHC8 308 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 CDX2Q99626 313 aaPredicted RBP10.08□□□□□ -0.8
VPS39-201ENST00000318006 OR2D2Q9H210 308 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 C1QL1O75973 258 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 PRSS1P07477 247 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 EIF4E3Q8N5X7 224 aaKnown RBP10.08□□□□□ -0.8
VPS39-201ENST00000318006 OR2D3Q8NGH3 330 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 C10orf35Q96D05 121 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 SLC25A38Q96DW6 304 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 FSCN3Q9NQT6 498 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 MT-ND6P03923 174 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 TRGC1P0CF51 173 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 PMCHL1Q16048 86 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 C12orf54Q6X4T0 127 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 SFTPA2Q8IWL1 248 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 GMPPAQ96IJ6 420 aaPredicted RBP10.08□□□□□ -0.8
VPS39-201ENST00000318006 DUSP15Q9H1R2 295 aaPredicted RBP10.08□□□□□ -0.8
VPS39-201ENST00000318006 LHX9Q9NQ69 397 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 PSG11Q9UQ72 335 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 H0YL77 283 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 GAMTQ14353 236 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 PLPPR5Q32ZL2 321 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 SPINK9Q5DT21 86 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 OR10D3Q8NH80 312 aa10.08□□□□□ -0.8
VPS39-201ENST00000318006 LOC285556D6RIA3 1793 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 HELTA6NFD8 242 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 CORTO00230 105 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 SP1P08047 785 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 RNPS1Q15287 305 aaKnown RBP10.07□□□□□ -0.8
VPS39-201ENST00000318006 ANKRD55Q3KP44 614 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 ZNF774Q6NX45 483 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 ASB10Q8WXI3 467 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 PGLYRP3Q96LB9 341 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms