RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ACY3Q96HD9 319 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 DOCK4Q8N1I0 1966 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 A0A1W2PQF6 199 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 LYPD3O95274 346 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 OR5G3P0C626 314 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 OR10D3Q8NH80 312 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 GFI1Q99684 422 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 OR2D2Q9H210 308 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 KLF13Q9Y2Y9 288 aaPredicted RBP16.84■□□□□ 0.29
USP48-201ENST00000308271 IGHMP01871 453 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 CA6P23280 308 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 TGIF1Q15583 401 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 OR2M3Q8NG83 312 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 TPPP3Q9BW30 176 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 SH3BGRL3Q9H299 93 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 TRGC1P0CF51 173 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 SMAD4Q13485 552 aaKnown RBP16.84■□□□□ 0.29
USP48-201ENST00000308271 OR4A4PQ8NGN8 299 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 ZNF665Q9H7R5 613 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 IL17BQ9UHF5 180 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 LHFPL6Q9Y693 200 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 SPTA1P02549 2419 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 SBF1O95248 1867 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 M0R1X1 148 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 ENSAO43768 121 aaKnown RBP16.83■□□□□ 0.29
USP48-201ENST00000308271 LPAL2Q16609 132 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 DTD1Q8TEA8 209 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 HLA-CQ95604 372 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 SCARF2Q96GP6 870 aaPredicted RBP16.83■□□□□ 0.29
USP48-201ENST00000308271 GINS3Q9BRX5 216 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 CABIN1Q9Y6J0 2220 aa16.83■□□□□ 0.29
USP48-201ENST00000308271 ZNF646O15015 1829 aaPredicted RBP16.83■□□□□ 0.29
USP48-201ENST00000308271 NPIPB13A6NJU9 1138 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 NPIPB4C9JG80 1138 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 CCL7P80098 99 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 MEF2BQ02080 365 aaPredicted RBP16.83■□□□□ 0.28
USP48-201ENST00000308271 PRR27Q6MZM9 219 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 SLC25A47Q6Q0C1 308 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 Q6ZN92 141 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 SLC25A28Q96A46 364 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 TRAV34A0A0B4J273 112 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 F2RP25116 425 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 S100A7P31151 101 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 PLPPR5Q32ZL2 321 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 HIKESHIQ53FT3 197 aa16.83■□□□□ 0.28
USP48-201ENST00000308271 BCL3P20749 454 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 ZNF600Q6ZNG1 722 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 LRRC75AQ8NAA5 344 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 TBX15Q96SF7 602 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 ZNF576Q9H609 170 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 SIT1Q9Y3P8 196 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 GVINP1Q7Z2Y8 2422 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 NKX6-3A6NJ46 265 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 SPINK4O60575 86 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 ZNF718Q3SXZ3 478 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 ACER2Q5QJU3 275 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 FAM27BQ5VT28 67 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 OR52M1Q8NGK5 317 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 ADIPOR1Q96A54 375 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 RNF126Q9BV68 326 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 ESRP2Q9H6T0 727 aaKnown RBP16.82■□□□□ 0.28
USP48-201ENST00000308271 TOX3O15405 576 aaPredicted RBP16.82■□□□□ 0.28
USP48-201ENST00000308271 ZNF253O75346 499 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 BMP5P22003 454 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 CXorf66Q5JRM2 361 aaPredicted RBP16.82■□□□□ 0.28
USP48-201ENST00000308271 OR8G5Q8NG78 346 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 P4HTMQ9NXG6 502 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 ASXL3Q9C0F0 2248 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 TMEM187Q14656 261 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 HLA-DRB5Q30154 266 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 POM121L2Q96KW2 1035 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 RSG1Q9BU20 258 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 OR2H1Q9GZK4 316 aa16.82■□□□□ 0.28
USP48-201ENST00000308271 SPTBN2O15020 2390 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 H0Y980 276 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 FCGR3BO75015 233 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 RAB24Q969Q5 203 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 DHRS7CA6NNS2 312 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 PSG2P11465 335 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 IGFBP3P17936 291 aaPredicted RBP16.81■□□□□ 0.28
USP48-201ENST00000308271 IL3RAP26951 378 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 SRP14P37108 136 aaKnown RBP16.81■□□□□ 0.28
USP48-201ENST00000308271 OR3A1P47881 315 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 NXPH1P58417 271 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 MSL2Q9HCI7 577 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 TMEM38BQ9NVV0 291 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 HYAL1Q12794 435 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 SMIM15Q7Z3B0 74 aa16.81■□□□□ 0.28
USP48-201ENST00000308271 DNPH1O43598 174 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 HOXA5P20719 270 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 BIVMQ86UB2 503 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 PSG11Q9UQ72 335 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 PAFAH1B2P68402 229 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 SH2D2AQ9NP31 389 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 CISD1Q9NZ45 108 aaKnown RBP16.8■□□□□ 0.28
USP48-201ENST00000308271 SCN2AQ99250 2005 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 A0A1B0GV90 55 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 COX7A2P2O60397 106 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 ZXDAP98168 799 aa16.8■□□□□ 0.28
USP48-201ENST00000308271 OR10AD1Q8NGE0 317 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms