RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 DOCK1Q14185 1865 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 WNT9BO14905 357 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 CST2P09228 141 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 FAM106CPP0CH98 169 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 PSMB2P49721 201 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 OR4S2Q8NH73 311 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 RNF115Q9Y4L5 304 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 CASP8AP2Q9UKL3 1982 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 TGOLN2O43493 480 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 IGHV3-11P01762 117 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 BGLAPP02818 100 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 CRYBA2P53672 197 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 CSRP2Q16527 193 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 IGSF11Q5DX21 431 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 MSRB3Q8IXL7 192 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 FKBP11Q9NYL4 201 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 SHANK3Q9BYB0 1731 aa6.77□□□□□ -1.32
SCN9A-201ENST00000303354 MAST2Q6P0Q8 1798 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 COX6A1P12074 109 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 ERVFRD-1P60508 538 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 ENDOGQ14249 297 aaKnown RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 TEX30Q5JUR7 227 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 C12orf73Q69YU5 71 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 GHITMQ9H3K2 345 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 C1RLQ9NZP8 487 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 LTBP4Q8N2S1 1624 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 EBLN2Q6P2I7 272 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 PPP1R32Q7Z5V6 425 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 PHYHIPQ92561 330 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 TIMP4Q99727 224 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 J3QR06 171 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 SFT2D2O95562 160 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 HPXP02790 462 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 SCTP09683 121 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 SUCLG1P53597 346 aaKnown RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 PRSS53Q2L4Q9 553 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 MPV17LQ2QL34 196 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 C10orf113Q5VZT2 155 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 GP6Q9HCN6 339 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 IGHV1-69-2A0A0G2JMI3 117 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 RPL13AP40429 203 aaKnown RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 MRPL54Q6P161 138 aaKnown RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 LILRB4Q8NHJ6 448 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 DYNC2LI1Q8TCX1 351 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 H3BVH4 76 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 SPANXN1Q5VSR9 72 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 ZNF880Q6PDB4 577 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 ABHD12Q8N2K0 398 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 IL20Q9NYY1 176 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 ZNF629Q9UEG4 869 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 EFNB2P52799 333 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 TMEM128Q5BJH2 165 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 KLHDC8BQ8IXV7 354 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 NOL4LQ96MY1 436 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 NHSL1Q5SYE7 1610 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 OR4C46A6NHA9 309 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 ICMTO60725 284 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 MBP02144 154 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 GIPP09681 153 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 MDH2P40926 338 aaKnown RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 PNLIPRP3Q17RR3 467 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 LYZL2Q7Z4W2 148 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 DTD1Q8TEA8 209 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 NAA60Q9H7X0 242 aa6.77□□□□□ -1.33
SCN9A-201ENST00000303354 ARID1BQ8NFD5 2236 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-201ENST00000303354 hCG_38984A0A1B0GV85 526 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 SNCGO76070 127 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 RNF165Q6ZSG1 346 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 LRRC75AQ8NAA5 344 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 MUC21A0A0G2JKD1 596 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 MUC21A0A140T8X8 626 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 KCNJ3P48549 501 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 MUC21Q5SSG8 566 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 FAM74A4Q5TZK3 123 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 IGKV1-8A0A0C4DH67 115 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 A0A1B0GUH1 482 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 PRR33A8MZF0 331 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 OR2H2O95918 312 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 FBP1P09467 338 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 MDKP21741 143 aaPredicted RBP6.76□□□□□ -1.33
SCN9A-201ENST00000303354 IZUMO4Q1ZYL8 232 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 C11orf87Q6NUJ2 197 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 GLMPQ8WWB7 406 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 RHOFQ9HBH0 211 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 SUMO1P63165 101 aaKnown RBP6.76□□□□□ -1.33
SCN9A-201ENST00000303354 LIAT1Q6ZQX7 453 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 CADM3Q8N126 398 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 MRPL24Q96A35 216 aaKnown RBP6.76□□□□□ -1.33
SCN9A-201ENST00000303354 NPAS1Q99742 590 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 FAM157CP0CG43 387 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 USF1P22415 310 aaPredicted RBP6.76□□□□□ -1.33
SCN9A-201ENST00000303354 ZNRF1Q8ND25 227 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 PTX4Q96A99 478 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 YIPF6Q96EC8 236 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 SLC25A1P53007 311 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 LDLRAD3Q86YD5 345 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 TMPRSS5Q9H3S3 457 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 C7orf69Q9H7B7 122 aa6.76□□□□□ -1.33
SCN9A-201ENST00000303354 ELF5Q9UKW6 265 aaPredicted RBP6.76□□□□□ -1.33
SCN9A-201ENST00000303354 TTC3P53804 2025 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms