RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 C4orf46Q504U0 113 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 AVPI1Q5T686 147 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 FAHD2BQ6P2I3 314 aaPredicted RBP13.12□□□□□ -0.31
LSM6-201ENST00000296581 SLC22A25Q6T423 547 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 RDH5Q92781 318 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 FAHD2AQ96GK7 314 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 TMEM68Q96MH6 324 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 CHIAQ9BZP6 476 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 SEBOXQ9HB31 216 aaPredicted RBP13.12□□□□□ -0.31
LSM6-201ENST00000296581 CHMP1AQ9HD42 196 aaPredicted RBP13.12□□□□□ -0.31
LSM6-201ENST00000296581 UFSP2Q9NUQ7 469 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 ITPR1Q14643 2758 aa13.12□□□□□ -0.31
LSM6-201ENST00000296581 HS3ST1O14792 307 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 OR2H2O95918 312 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 CRYBA1P05813 215 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 OR5H8P0DN80 308 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 NFYAP23511 347 aaPredicted RBP13.11□□□□□ -0.31
LSM6-201ENST00000296581 FPR2P25090 351 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 CFHR2P36980 270 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 SNRPEP62304 92 aaKnown RBP13.11□□□□□ -0.31
LSM6-201ENST00000296581 SURF2Q15527 256 aaPredicted RBP13.11□□□□□ -0.31
LSM6-201ENST00000296581 ACP7Q6ZNF0 438 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 NEK7Q8TDX7 302 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 MEGF10Q96KG7 1140 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 SCGB3A2Q96PL1 93 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 DECR2Q9NUI1 292 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 C1orf123Q9NWV4 160 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 OR5H14A6NHG9 310 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 GPR31O00270 319 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 SLC33A1O00400 549 aaPredicted RBP13.11□□□□□ -0.31
LSM6-201ENST00000296581 HSPB6O14558 160 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 SH2D1BO14796 132 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 SNAPC5O75971 98 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 NPY4RP50391 375 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 NCMAPQ5T1S8 102 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 DHRS11Q6UWP2 260 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 WDR13Q9H1Z4 485 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 TREM2Q9NZC2 230 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 ATP23Q9Y6H3 246 aa13.11□□□□□ -0.31
LSM6-201ENST00000296581 NKX2-6A6NCS4 301 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 WNT9BO14905 357 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 GPR37O15354 613 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 ZBTB25P24278 435 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 S100A11P31949 105 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 MDH2P40926 338 aaKnown RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 ECI1P42126 302 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 TAS2R31P59538 309 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 ADIPOQQ15848 244 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 DMRTC2Q8IXT2 367 aaPredicted RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 PUSL1Q8N0Z8 303 aaKnown RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 TMEM185AQ8NFB2 350 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 MRPL30Q8TCC3 161 aaKnown RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 OR2V2Q96R30 315 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 C5orf66Q9H5L9 145 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 A0A1B0GV90 55 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 SIRPB1O00241 398 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 HAND1O96004 215 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 GLRA1P23415 457 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 LMO1P25800 156 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 GATA4P43694 442 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 GMFBP60983 142 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 UBE2MP61081 183 aaKnown RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 SORDQ00796 357 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 DHRS2Q13268 280 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 DHRS7BQ6IAN0 325 aaPredicted RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 ZNF880Q6PDB4 577 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 GAPTQ8N292 157 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 ADAD2Q8NCV1 583 aaKnown RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 LRRC29Q8WV35 223 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 ZNF2Q9BSG1 426 aaPredicted RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 TMPRSS13Q9BYE2 586 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 RASL12Q9NYN1 266 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 MGAT4CQ9UBM8 478 aa13.1□□□□□ -0.31
LSM6-201ENST00000296581 ERRFI1Q9UJM3 462 aaPredicted RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 TPRP12270 2363 aaKnown RBP13.1□□□□□ -0.31
LSM6-201ENST00000296581 COL6A6A6NMZ7 2263 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 SPRY3O43610 288 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 KNG1P01042 644 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 CDSNQ15517 529 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 ANKRD39Q53RE8 183 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 OR2B11Q5JQS5 317 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 LYG2Q86SG7 212 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 OR2AK2Q8NG84 335 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 PRR7Q8TB68 274 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 TSNAXQ99598 290 aaKnown RBP13.09□□□□□ -0.31
LSM6-201ENST00000296581 LIME1Q9H400 295 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 PIPOXQ9P0Z9 390 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 ZDHHC8Q9ULC8 765 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 A0A1B0GW55 424 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 SRRM5B3KS81 715 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 SHISA9B4DS77 424 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 UBE2CO00762 179 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 IGHV1-46P01743 117 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 DUX4L2P0CJ85 424 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 DUX4L3P0CJ86 424 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 DUX4L4P0CJ87 422 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 DUX4L5P0CJ88 424 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 DUX4L6P0CJ89 424 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 DUX4L7P0CJ90 424 aa13.09□□□□□ -0.31
LSM6-201ENST00000296581 PPP1R1AQ13522 171 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms