RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 PGLYRP1O75594 196 aaPredicted RBP20.31■□□□□ 0.84
TRIM54-201ENST00000296098 GRPP07492 148 aa20.31■□□□□ 0.84
TRIM54-201ENST00000296098 NKX2-1P43699 371 aaPredicted RBP20.31■□□□□ 0.84
TRIM54-201ENST00000296098 BLOC1S1P78537 153 aa20.31■□□□□ 0.84
TRIM54-201ENST00000296098 ZNF146Q15072 292 aa20.31■□□□□ 0.84
TRIM54-201ENST00000296098 TAAR6Q96RI8 345 aa20.31■□□□□ 0.84
TRIM54-201ENST00000296098 ARV1Q9H2C2 271 aa20.31■□□□□ 0.84
TRIM54-201ENST00000296098 OBP2BQ9NPH6 170 aa20.31■□□□□ 0.84
TRIM54-201ENST00000296098 URB1O60287 2271 aaKnown RBP20.3■□□□□ 0.84
TRIM54-201ENST00000296098 IGHV3-64DA0A0J9YX35 117 aa20.3■□□□□ 0.84
TRIM54-201ENST00000296098 SH2D1BO14796 132 aa20.3■□□□□ 0.84
TRIM54-201ENST00000296098 TAGLNQ01995 201 aaKnown RBP20.3■□□□□ 0.84
TRIM54-201ENST00000296098 ZNF169Q14929 603 aaPredicted RBP20.3■□□□□ 0.84
TRIM54-201ENST00000296098 IL22RA2Q969J5 263 aa20.3■□□□□ 0.84
TRIM54-201ENST00000296098 ABHD14BQ96IU4 210 aa20.3■□□□□ 0.84
TRIM54-201ENST00000296098 WFDC1Q9HC57 220 aa20.3■□□□□ 0.84
TRIM54-201ENST00000296098 PLSCR4Q9NRQ2 329 aa20.3■□□□□ 0.84
TRIM54-201ENST00000296098 OR1A1Q9P1Q5 309 aa20.3■□□□□ 0.84
TRIM54-201ENST00000296098 CACNA1GO43497 2377 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP20.29■□□□□ 0.84
TRIM54-201ENST00000296098 NMSQ5H8A3 153 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 OR8G5Q8NG78 346 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 C11orf1Q9H5F2 150 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 ERRFI1Q9UJM3 462 aaPredicted RBP20.29■□□□□ 0.84
TRIM54-201ENST00000296098 PURGQ9UJV8 347 aaKnown RBP20.29■□□□□ 0.84
TRIM54-201ENST00000296098 TINAGQ9UJW2 476 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 TRAPPC2LQ9UL33 140 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 TSPAN4O14817 238 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 ATG12O94817 140 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 PVALBP20472 110 aaPredicted RBP20.29■□□□□ 0.84
TRIM54-201ENST00000296098 VDAC1P21796 283 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 FIP1L1Q6UN15 594 aaKnown RBP20.29■□□□□ 0.84
TRIM54-201ENST00000296098 CXorf67Q86X51 503 aaPredicted RBP20.29■□□□□ 0.84
TRIM54-201ENST00000296098 OR10V1Q8NGI7 309 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 PARP11Q9NR21 331 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 PLA2G2EQ9NZK7 142 aa20.29■□□□□ 0.84
TRIM54-201ENST00000296098 TRAV39A0A0B4J263 110 aa20.28■□□□□ 0.84
TRIM54-201ENST00000296098 CLEC18AA5D8T8 446 aa20.28■□□□□ 0.84
TRIM54-201ENST00000296098 CECR9P0C854 216 aa20.28■□□□□ 0.84
TRIM54-201ENST00000296098 F2RP25116 425 aa20.28■□□□□ 0.84
TRIM54-201ENST00000296098 ARHGDIBP52566 201 aa20.28■□□□□ 0.84
TRIM54-201ENST00000296098 SRSF3P84103 164 aaKnown RBP20.28■□□□□ 0.84
TRIM54-201ENST00000296098 CLEC18CQ8NCF0 446 aa20.28■□□□□ 0.84
TRIM54-201ENST00000296098 PROCRQ9UNN8 238 aa20.28■□□□□ 0.84
TRIM54-201ENST00000296098 LOC105371267A0A1B0GV96 52 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 MLNRO43193 412 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 TNFSF13O75888 250 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 ADCYAP1P18509 176 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 EWSR1Q01844 656 aaKnown RBP eCLIP20.27■□□□□ 0.84
TRIM54-201ENST00000296098 TCF15Q12870 199 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 ZNF273Q14593 569 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 TSNAXQ99598 290 aaKnown RBP20.27■□□□□ 0.84
TRIM54-201ENST00000296098 TREM1Q9NP99 234 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 TAAR3PQ9P1P4 343 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 DKK4Q9UBT3 224 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 ACAA1P09110 424 aaPredicted RBP20.27■□□□□ 0.84
TRIM54-201ENST00000296098 CAV2P51636 162 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 NHLH2Q02577 135 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 SWI5Q1ZZU3 235 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 Q6ZRG5 221 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 OR2C3Q8N628 320 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 GINS3Q9BRX5 216 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 NKX6-2Q9C056 277 aaPredicted RBP20.27■□□□□ 0.84
TRIM54-201ENST00000296098 OPN3Q9H1Y3 402 aaPredicted RBP20.27■□□□□ 0.84
TRIM54-201ENST00000296098 HES4Q9HCC6 221 aa20.27■□□□□ 0.84
TRIM54-201ENST00000296098 FAM212BQ9NTI7 297 aaPredicted RBP20.27■□□□□ 0.84
TRIM54-201ENST00000296098 HAND1O96004 215 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 SEC11BP0C7V7 166 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 TUBG1P23258 451 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 POLR2GP62487 172 aaKnown RBP eCLIP20.26■□□□□ 0.83
TRIM54-201ENST00000296098 BTNL8Q6UX41 500 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 PRR18Q8N4B5 295 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 ZNF610Q8N9Z0 462 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 CXXC4Q9H2H0 198 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 TMEM231Q9H6L2 316 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 TUBG2Q9NRH3 451 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 TIMM8AO60220 97 aaPredicted RBP20.26■□□□□ 0.83
TRIM54-201ENST00000296098 SSSCA1O60232 199 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 IGLV1-44P01699 117 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 F2RL1P55085 397 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 OR51H1Q8NH63 302 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 STARD4Q96DR4 205 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 BCL2L14Q9BZR8 327 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 MBNL3Q9NUK0 354 aaKnown RBP20.26■□□□□ 0.83
TRIM54-201ENST00000296098 OR14J1Q9UGF5 321 aa20.26■□□□□ 0.83
TRIM54-201ENST00000296098 PIGBOS1A0A0B4J2F0 54 aa20.25■□□□□ 0.83
TRIM54-201ENST00000296098 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP20.25■□□□□ 0.83
TRIM54-201ENST00000296098 TESK1Q15569 626 aa20.25■□□□□ 0.83
TRIM54-201ENST00000296098 ZNF71Q9NQZ8 489 aaPredicted RBP20.25■□□□□ 0.83
TRIM54-201ENST00000296098 WIPI2Q9Y4P8 454 aa20.25■□□□□ 0.83
TRIM54-201ENST00000296098 HSPA12AO43301 675 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 CGAP01215 116 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 WNT2P09544 360 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 CEACAM1P13688 526 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 KITLGP21583 273 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 EIF2S3P41091 472 aaKnown RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 P2RY6Q15077 328 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 HMGN3Q15651 99 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 CXorf66Q5JRM2 361 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 IGFL3Q6UXB1 125 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms