RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 IGKV1D-13A0A0B4J2D9 117 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 IFNA5P01569 189 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 IGKV1-13P0DP09 117 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 FOXG1P55316 489 aaPredicted RBP10.88□□□□□ -0.67
LIG1-201ENST00000263274 CLEC2AQ6UVW9 174 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 ZNF429Q86V71 674 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 TGIF2LXQ8IUE1 241 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 CPEB3Q8NE35 698 aaKnown RBP10.88□□□□□ -0.67
LIG1-201ENST00000263274 WASF3Q9UPY6 502 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 DOCK11Q5JSL3 2073 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 ICE1Q9Y2F5 2266 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 TSTD3H0UI37 97 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 CA11O75493 328 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 KLF7O75840 302 aaPredicted RBP10.88□□□□□ -0.67
LIG1-201ENST00000263274 MDKP21741 143 aaPredicted RBP10.88□□□□□ -0.67
LIG1-201ENST00000263274 RPS16P62249 146 aaKnown RBP10.88□□□□□ -0.67
LIG1-201ENST00000263274 CLEC12BQ2HXU8 276 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 CCDC54Q8NEL0 328 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 CPT1CQ8TCG5 803 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 TMEM171Q8WVE6 324 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 PSMF1Q92530 271 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 RAB39BQ96DA2 213 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 TMEM222Q9H0R3 208 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 PPP1R3CQ9UQK1 317 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 WSB1Q9Y6I7 421 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 ARHGAP21Q5T5U3 1957 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 A0A1W2PR80 420 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 HMGB3O15347 200 aaKnown RBP10.88□□□□□ -0.67
LIG1-201ENST00000263274 CYB5BO43169 146 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 NGFP01138 241 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 FOLR2P14207 255 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 AGAP20933 346 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 S100GP29377 79 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 TAS2R60P59551 318 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 TCEAL6Q6IPX3 200 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 UNQ6494/PRO21346Q6UXR6 183 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 COMMD1Q8N668 190 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 OR2Y1Q8NGV0 311 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 SCGB1C1Q8TD33 95 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 RNF138Q8WVD3 245 aa10.88□□□□□ -0.67
LIG1-201ENST00000263274 ERRFI1Q9UJM3 462 aaPredicted RBP10.88□□□□□ -0.67
LIG1-201ENST00000263274 hCG_38984A0A1B0GV85 526 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 FAM157AC9JC47 383 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 SYNGR1O43759 233 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 TUBG1P23258 451 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 DLK1P80370 383 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 GAMTQ14353 236 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 C3AR1Q16581 482 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 MPV17LQ2QL34 196 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 NIPSNAP3BQ9BS92 247 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 RNF122Q9H9V4 155 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 LY6G6EA0A0G2JKS1 128 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 PDGFBP01127 241 aaPredicted RBP10.87□□□□□ -0.67
LIG1-201ENST00000263274 MLF1P58340 268 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 RPS23P62266 143 aaKnown RBP10.87□□□□□ -0.67
LIG1-201ENST00000263274 ZNF100Q8IYN0 542 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 LFNGQ8NES3 379 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 C12orf49Q9H741 205 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 GLRX2Q9NS18 164 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 U3KQA8 63 aa10.87□□□□□ -0.67
LIG1-201ENST00000263274 RBMXL2O75526 392 aaKnown RBP10.86□□□□□ -0.67
LIG1-201ENST00000263274 SRD5A2P31213 254 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 CYB561P49447 251 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 ELLP55199 621 aaPredicted RBP10.86□□□□□ -0.67
LIG1-201ENST00000263274 HIST1H3AP68431 136 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 AARDQ4LEZ3 155 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 HIST2H3PS2Q5TEC6 136 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 TMEM211Q6ICI0 200 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 LINC00696Q6ZRV3 163 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 SELENOHQ8IZQ5 122 aaKnown RBP10.86□□□□□ -0.67
LIG1-201ENST00000263274 MISP3Q96FF7 219 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 RSG1Q9BU20 258 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 PPP1R14DQ9NXH3 145 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 CRIM1Q9NZV1 1036 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 PROB1E7EW31 1015 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 WDR1O75083 606 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 DKK1O94907 266 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 METTL15P1P0C7V9 234 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 MCEMP1Q8IX19 187 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 TUSC5Q8IXB3 177 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 OR5T1Q8NG75 326 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 LRFN1Q9P244 771 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 TMEM238LA0A1B0GVL6 79 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 K7N7A8 449 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 DDTP30046 118 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 IL11RAQ14626 422 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 Q6ZPA2 131 aa10.86□□□□□ -0.67
LIG1-201ENST00000263274 SF3B5Q9BWJ5 86 aaKnown RBP10.86□□□□□ -0.67
LIG1-201ENST00000263274 SLC22A20A6NK97 555 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 RPL36A-HNRNPH2H7BZ11 118 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 IGHV2-5P01817 119 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 STARD6P59095 220 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 SRPXP78539 464 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 PLGLB1Q02325 96 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 PRR14LQ5THK1 2151 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 ZDHHC23Q8IYP9 409 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 OR4D5Q8NGN0 318 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 OR1K1Q8NGR3 316 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 HES7Q9BYE0 225 aa10.85□□□□□ -0.67
LIG1-201ENST00000263274 PLA2G3Q9NZ20 509 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 138.1 ms