RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 POLR2GP62487 172 aaKnown RBP eCLIP16.74■□□□□ 0.27
UPF1-201ENST00000262803 RPS4XP62701 263 aaKnown RBP16.74■□□□□ 0.27
UPF1-201ENST00000262803 C10orf113Q5VZT2 155 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 FCN1O00602 326 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 PRF1P14222 555 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 TMEM183BQ1AE95 376 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.74■□□□□ 0.27
UPF1-201ENST00000262803 OR10A7Q8NGE5 316 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 DTX4Q9Y2E6 619 aa16.74■□□□□ 0.27
UPF1-201ENST00000262803 CDK2AP1O14519 115 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 CDIPTO14735 213 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 PPYP01298 95 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 PMCHP20382 165 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 TSPO2Q5TGU0 170 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FDX2Q6P4F2 183 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 TMEM116Q8NCL8 245 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 SMOC1Q9H4F8 434 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 SLC25A10Q9UBX3 287 aaPredicted RBP16.73■□□□□ 0.27
UPF1-201ENST00000262803 SCN3AQ9NY46 2000 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM186AA6NE01 2351 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 ACAA2P42765 397 aaKnown RBP16.73■□□□□ 0.27
UPF1-201ENST00000262803 TMEM37Q8WXS4 190 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 LINC00052Q96N35 136 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 TINAGQ9UJW2 476 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 SPAARA0A1B0GVQ0 90 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 A0A1W2PS18 150 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A10PA6NDY2 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A18PA6NE21 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A16PA6NEW6 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A20PA6NIJ5 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A8PA6NJQ4 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A7PA6NKC0 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A22PA8MWA6 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A12PA8MX19 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A5PA8MXJ8 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A23PA8MXZ1 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 LEUTXA8MZ59 168 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A15PP0C7V4 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A13PP0C7W8 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A14PP0C7W9 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 FAM90A24PP0C7X0 464 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 SULT1A1P50225 295 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 LGALSLQ3ZCW2 172 aaPredicted RBP16.73■□□□□ 0.27
UPF1-201ENST00000262803 SLC23A3Q6PIS1 610 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.73■□□□□ 0.27
UPF1-201ENST00000262803 MS4A7Q9GZW8 240 aaPredicted RBP16.73■□□□□ 0.27
UPF1-201ENST00000262803 GSX1Q9H4S2 264 aaPredicted RBP16.73■□□□□ 0.27
UPF1-201ENST00000262803 FGF5P12034 268 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 SNRPEP62304 92 aaKnown RBP16.73■□□□□ 0.27
UPF1-201ENST00000262803 ZNF721Q8TF20 911 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 TMUB1Q9BVT8 246 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 SLC25A22Q9H936 323 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 ST6GALNAC2Q9UJ37 374 aa16.73■□□□□ 0.27
UPF1-201ENST00000262803 PTP4A3O75365 173 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 P01737 135 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 FAM27BQ5VT28 67 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 SPNS3Q6ZMD2 512 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 SCMH1Q96GD3 660 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 WIPI2Q9Y4P8 454 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 SIRT4Q9Y6E7 314 aaPredicted RBP16.72■□□□□ 0.27
UPF1-201ENST00000262803 A0A0U1RQV5 110 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 MGST3O14880 152 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 TFF2Q03403 129 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 ASCL3Q9NQ33 180 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 ZDHHC8Q9ULC8 765 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 FOXS1O43638 330 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 TEX30Q5JUR7 227 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 STAG3L2P0CL84 134 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 GGTLC2Q14390 218 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 OR8I2Q8N0Y5 310 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 ZNF519Q8TB69 540 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 ZNF552Q9H707 407 aaPredicted RBP16.72■□□□□ 0.27
UPF1-201ENST00000262803 PPP1R3EQ9H7J1 279 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 FOXD3Q9UJU5 478 aaPredicted RBP16.72■□□□□ 0.27
UPF1-201ENST00000262803 UBR3Q6ZT12 1888 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 WNT2BQ93097 391 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 ZNF501Q96CX3 271 aaPredicted RBP16.72■□□□□ 0.27
UPF1-201ENST00000262803 TMEM191AQ9H0A3 160 aa16.72■□□□□ 0.27
UPF1-201ENST00000262803 RAB29O14966 203 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 MMP9P14780 707 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 FABP4P15090 132 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 MESP2Q0VG99 397 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 PARD6AQ9NPB6 346 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 MARF1Q9Y4F3 1742 aaKnown RBP16.71■□□□□ 0.27
UPF1-201ENST00000262803 MFSD2BA6NFX1 497 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 M0R143 59 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 CXorf1O96002 111 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 GAPDHP04406 335 aaKnown RBP16.71■□□□□ 0.27
UPF1-201ENST00000262803 FAM214BQ7L5A3 538 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 STPG3Q8N7X2 389 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 BVESQ8NE79 360 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 HPRT1P00492 218 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 VSIG8P0DPA2 414 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 C9orf40Q8IXQ3 194 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 ZPLD1Q8TCW7 415 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 GHITMQ9H3K2 345 aa16.71■□□□□ 0.27
UPF1-201ENST00000262803 ELOA3CA0A087WX78 387 aaPredicted RBP16.71■□□□□ 0.26
UPF1-201ENST00000262803 FAM157AC9JC47 383 aa16.71■□□□□ 0.26
UPF1-201ENST00000262803 ZNF250P15622 560 aa16.71■□□□□ 0.26
UPF1-201ENST00000262803 RBFOX3A6NFN3 312 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms