RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 FAM166AQ6J272 317 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 FAM169BQ8N8A8 192 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 POC1AQ8NBT0 407 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 PPP1R1CQ8WVI7 109 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 CNTNAP3BQ96NU0 1288 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 CCL13Q99616 98 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 OR51I2Q9H344 312 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 OR2W1Q9Y3N9 320 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 FAM215AQ9Y5M1 114 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 VPS13AQ96RL7 3174 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.87□□□□□ -0.83
VPS4A-201ENST00000254950 ADH4P08319 380 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 MPPED2Q15777 294 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 COLCA1Q6ZS62 124 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 PDZD9Q8IXQ8 264 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 LYG1Q8N1E2 194 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 OR2D2Q9H210 308 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 TMED3Q9Y3Q3 217 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 CELSR3Q9NYQ7 3312 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 IGKV3-15P01624 115 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 OMGP23515 440 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 SNCAP37840 140 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 CEBPDP49716 269 aaPredicted RBP9.87□□□□□ -0.83
VPS4A-201ENST00000254950 ARSJQ5FYB0 599 aaPredicted RBP9.87□□□□□ -0.83
VPS4A-201ENST00000254950 TMEM42Q69YG0 159 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 TPRX1Q8N7U7 411 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 HPSE2Q8WWQ2 592 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 PLSCR2Q9NRY7 297 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 MBD2Q9UBB5 411 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 C3orf85A0A1B0GTC6 90 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 H0YL77 283 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 OR5AC1P0C628 307 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 UBA52P62987 128 aaKnown RBP9.87□□□□□ -0.83
VPS4A-201ENST00000254950 Q3ZCU0 254 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 OR8B3Q8NGG8 313 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 OR8B2Q96RD0 313 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 NPDC1Q9NQX5 325 aaPredicted RBP9.87□□□□□ -0.83
VPS4A-201ENST00000254950 SLC2A9Q9NRM0 540 aa9.87□□□□□ -0.83
VPS4A-201ENST00000254950 GYPAP02724 150 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 CD74P04233 296 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 KITLGP21583 273 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 HTR2BP41595 481 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 GNG10P50151 68 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 RPL31P62899 125 aaKnown RBP9.86□□□□□ -0.83
VPS4A-201ENST00000254950 CLEC18BQ6UXF7 455 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 WDR89Q96FK6 387 aaPredicted RBP9.86□□□□□ -0.83
VPS4A-201ENST00000254950 HEYLQ9NQ87 328 aaPredicted RBP9.86□□□□□ -0.83
VPS4A-201ENST00000254950 SLC25A10Q9UBX3 287 aaPredicted RBP9.86□□□□□ -0.83
VPS4A-201ENST00000254950 VSIG4Q9Y279 399 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 WNT9BO14905 357 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 SLC51BQ86UW2 128 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 FAM89BQ8N5H3 189 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 CD300LFQ8TDQ1 290 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 ARPC5LQ9BPX5 153 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 MRPL37Q9BZE1 423 aaKnown RBP9.86□□□□□ -0.83
VPS4A-201ENST00000254950 CCL28Q9NRJ3 127 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 A0A0B4J2A0 478 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 OR2F2O95006 317 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 CYB5R3P00387 301 aaPredicted RBP9.86□□□□□ -0.83
VPS4A-201ENST00000254950 SCTP09683 121 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 HBG1P69891 147 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 HBG2P69892 147 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 OR2F1Q13607 317 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 RAB31Q13636 194 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 IGSF11Q5DX21 431 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 SSX9Q7RTT3 188 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 SPAG16Q8N0X2 631 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 SLX1AQ9BQ83 275 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 DKK4Q9UBT3 224 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 LPAR3Q9UBY5 353 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 SHPKQ9UHJ6 478 aa9.86□□□□□ -0.83
VPS4A-201ENST00000254950 ERVH48-1M5A8F1 160 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 NDUFA2O43678 99 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 IGHV3-13P01766 116 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 IFNA4P05014 189 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 PGA5P0DJD9 388 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ESCO2Q56NI9 601 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 AKR1C8PQ5T2L2 129 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ELP2Q6IA86 826 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ACOT7LQ6ZUV0 252 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 GAPTQ8N292 157 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 C22orf15Q8WYQ4 148 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 Q9N2K0 584 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 CLN8Q9UBY8 286 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 CACNA1AO00555 2505 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ODAMA1E959 279 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 C17orf100A8MU93 164 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 NXPH3O95157 252 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 CLDN14O95500 239 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 IFNA10P01566 189 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 SULT1A3P0DMM9 295 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 SULT1A4P0DMN0 295 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 RCC1P18754 421 aaPredicted RBP9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ZP1P60852 638 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ZNF616Q08AN1 781 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ZNF816Q0VGE8 651 aaPredicted RBP9.85□□□□□ -0.83
VPS4A-201ENST00000254950 SEZ6L2Q6UXD5 910 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ACP7Q6ZNF0 438 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 ONECUT1Q9UBC0 465 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 FREM1Q5H8C1 2179 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms