RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 DEDDO75618 318 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 FAM3AP98173 230 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 LINC00303Q3SY05 128 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 FAM214BQ7L5A3 538 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 BPIFA4PQ86YQ2 179 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 C9orf40Q8IXQ3 194 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 MRPL37Q9BZE1 423 aaKnown RBP11.21□□□□□ -0.62
USP40-201ENST00000251722 IL36GQ9NZH8 169 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 PIPOXQ9P0Z9 390 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 FOCADQ5VW36 1801 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 IGLV3-19P01714 112 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 ADAMTS17Q8TE56 1095 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 HIST1H2BAQ96A08 127 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 RPUSD4Q96CM3 377 aaKnown RBP11.21□□□□□ -0.62
USP40-201ENST00000251722 PILRAQ9UKJ1 303 aa11.21□□□□□ -0.62
USP40-201ENST00000251722 LSM2Q9Y333 95 aaKnown RBP11.21□□□□□ -0.62
USP40-201ENST00000251722 DNASE2O00115 360 aaPredicted RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 HINT1P49773 126 aaPredicted RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 ZNF343Q6P1L6 599 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 TMEM251Q8N6I4 163 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 ZCCHC14Q8WYQ9 949 aaKnown RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 FSCN3Q9NQT6 498 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 TMEFF2Q9UIK5 374 aaPredicted RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 CROCCQ5TZA2 2017 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 SMPD2O60906 423 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 SCGB1C2P0DMR2 95 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 CTLA4P16410 223 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 GPR6P46095 362 aaPredicted RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 OR10W1Q8NGF6 305 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 OR4C16Q8NGL9 310 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 TMEM272A0A1B0GTI8 110 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 DIRC3C9JPN6 131 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 OGG1O15527 345 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 KRASP01116 189 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 ZNF816Q0VGE8 651 aaPredicted RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 FHL5Q5TD97 284 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 ZFP62Q8NB50 900 aaPredicted RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 BEND2Q8NDZ0 799 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 OR5B3Q8NH48 314 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 VN1R17PQ8TDU5 208 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 TPPP3Q9BW30 176 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 MICAL3Q7RTP6 2002 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 ADAMTSL1Q8N6G6 1762 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 GSTZ1O43708 216 aaPredicted RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 SEMA7AO75326 666 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 HOXA6P31267 233 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 RPS27P42677 84 aaKnown RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 AESQ08117 197 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 IL13RA2Q14627 380 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 DNLZQ5SXM8 178 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 SFTPA1Q8IWL2 248 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 CD96P40200 585 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 SELENOPP49908 381 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 MRPS11P82912 194 aaKnown RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 CBLN3Q6UW01 205 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 MTFP1Q9UDX5 166 aa11.2□□□□□ -0.62
USP40-201ENST00000251722 RCL1Q9Y2P8 373 aaKnown RBP11.2□□□□□ -0.62
USP40-201ENST00000251722 MS4A18H0YCH9 400 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 BMPR1BO00238 502 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 ORM1P02763 201 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 PEBP1P30086 187 aaKnown RBP11.19□□□□□ -0.62
USP40-201ENST00000251722 LPAR6P43657 344 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 PLPPR5Q32ZL2 321 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 MS4A18Q3C1V0 323 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 BATF2Q8N1L9 274 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 PRNDQ9UKY0 176 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 CTDSPLO15194 276 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 SFT2D2O95562 160 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 HOXA5P20719 270 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 SLC25A35Q3KQZ1 300 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 ACSM6Q6P461 480 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 OR8B12Q8NGG6 310 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 RNF133Q8WVZ7 376 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 TINAGQ9UJW2 476 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 PSG11Q9UQ72 335 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 FAM221AA4D161 298 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 K7ESF4 209 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 CSRP1P21291 193 aaKnown RBP11.19□□□□□ -0.62
USP40-201ENST00000251722 SNRPNP63162 240 aaKnown RBP11.19□□□□□ -0.62
USP40-201ENST00000251722 NAAAQ02083 359 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 CD226Q15762 336 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 ZNF658BQ4V348 819 aaPredicted RBP11.19□□□□□ -0.62
USP40-201ENST00000251722 SFTPA2Q8IWL1 248 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 NAA60Q9H7X0 242 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 HSPB7Q9UBY9 170 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 COX5BP10606 129 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 IAPPP10997 89 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 SPATA45Q537H7 98 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 SLC22A18ASQ8N1D0 253 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 ZNF519Q8TB69 540 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 NAT8Q9UHE5 227 aa11.19□□□□□ -0.62
USP40-201ENST00000251722 PYCARD-AS1I3L0S3 204 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 CTSDP07339 412 aaPredicted RBP11.18□□□□□ -0.62
USP40-201ENST00000251722 GPX4P36969 197 aaPredicted RBP11.18□□□□□ -0.62
USP40-201ENST00000251722 FAM27BQ5VT28 67 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 OR1L1Q8NH94 360 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 CLN8Q9UBY8 286 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 SF3B6Q9Y3B4 125 aaKnown RBP11.18□□□□□ -0.62
USP40-201ENST00000251722 PPIAL4EA0A075B759 164 aa11.18□□□□□ -0.62
USP40-201ENST00000251722 A0A1B0GTH9 108 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms