RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TBL2Q9Y4P3 447 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PHLDA3Q9Y5J5 127 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 FAM215AQ9Y5M1 114 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 NCOA6Q14686 2063 aaPredicted RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 BSNQ9UPA5 3926 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 VWA8A3KMH1 1905 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 LCTP09848 1927 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 NSD1Q96L73 2696 aaPredicted RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 POLEQ07864 2286 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 OTOGQ6ZRI0 2925 aa-0.03□□□□□ -2.42
VPS35-212ENST00000640313 NUMA1Q14980 2115 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 NAV2Q8IVL1 2488 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SETD1AO15047 1707 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 NAV3Q8IVL0 2385 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CELSR1Q9NYQ6 3014 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 WDR19Q8NEZ3 1342 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 NRCAMQ92823 1304 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 DLG5Q8TDM6 1919 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TRAV8-7A0A075B6U6 113 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TRAV8-3A0A0A6YYJ7 113 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 IGHV3-15A0A0B4J1V0 119 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 IGHV2-26A0A0B4J1V2 119 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 IGHV3-73A0A0B4J1V6 119 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 A0A1B0GVG6 124 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 MDFIC2A0A1B0GVS7 189 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ANKRD20A5PA0PJZ0 165 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CTAGE15A4D2H0 777 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ARRDC5A6NEK1 342 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TVP23AA6NH52 213 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SIGLEC16A6NMB1 481 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CCDC169A6NNP5 214 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SUPT3HB4E1H0 165 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 H3BP45 60 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 KLRC4-KLRK1H3BQV0 150 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 WRBO00258 174 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 UPK2O00526 184 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CDIPTO14735 213 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TCAPO15273 167 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 RGS5O15539 181 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 DENRO43583 198 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TRAPPC3O43617 180 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 KDELR3O43731 214 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SHOX2O60902 331 aaPredicted RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 PDCD6O75340 191 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ZNF737O75373 536 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 HSBP1O75506 76 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 MYO1DO94832 1006 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SNAI1O95863 264 aaPredicted RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SOD1P00441 154 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 PRH1P02810 166 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GPX1P07203 203 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CRYGDP07320 174 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GUSBP08236 651 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CCL3P10147 92 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 MLNP12872 115 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ANXA8P13928 327 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CPMP14384 443 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CD36P16671 472 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SRMP19623 302 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ALOX5APP20292 161 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GALP22466 123 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 PRTN3P24158 256 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 IL12BP29460 328 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TSPOP30536 169 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 G6PCP35575 357 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 MAGEA1P43355 309 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GPR4P46093 362 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 INPP1P49441 399 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 XKP51811 444 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ATP5J2P56134 94 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 RWDD2BP57060 319 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 OR2B6P58173 313 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TSPEAR-AS2P59090 65 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 YWHAEP62258 255 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SLC35B1P78383 322 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 HOXC5Q00444 222 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GBE1Q04446 702 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 BAXQ07812 192 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 IFFO1Q0D2I5 559 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 C2orf80Q0P641 193 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 LRRC74AQ0VAA2 488 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 DOC2AQ14183 400 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GUSBP1Q15486 140 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 RAB11BQ15907 218 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ZBTB6Q15916 424 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ATP6V1FQ16864 119 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 HIKESHIQ53FT3 197 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ACTBL2Q562R1 376 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ACSBG2Q5FVE4 666 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 PIP5KL1Q5T9C9 394 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ANXA8L1Q5VT79 327 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 MLIPQ5VWP3 458 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 PLCXD3Q63HM9 321 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 DUPD1Q68J44 220 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SLC25A25Q6KCM7 469 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 UGT2A3Q6UWM9 527 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 Q6ZT83 130 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 Q6ZTI0 123 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CTAGE6Q86UF2 777 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 NAA40Q86UY6 237 aa-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms