RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CAPSLQ8WWF8 208 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 RAX2Q96IS3 184 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 DUX3Q96PT4 197 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 ZMAT4Q9H898 229 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 EDA2RQ9HAV5 297 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 C8orf4Q9NR00 106 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 DEGS1O15121 323 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 OR2F2O95006 317 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 CD2P06729 351 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 RAB3AP20336 220 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 CD24P25063 80 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 HTR1DP28221 377 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 GLIPR1P48060 266 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 GTF2A1P52655 376 aaPredicted RBP12.86□□□□□ -0.35
CLN3-264ENST00000637985 SCN1BQ07699 218 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 AESQ08117 197 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 IL18R1Q13478 541 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 SMN1Q16637 294 aaKnown RBP12.86□□□□□ -0.35
CLN3-264ENST00000637985 TMPRSS11AQ6ZMR5 421 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 NDNFQ8TB73 568 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 GPR148Q8TDV2 347 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 RBM14Q96PK6 669 aaKnown RBP12.86□□□□□ -0.35
CLN3-264ENST00000637985 SLC25A33Q9BSK2 321 aa12.86□□□□□ -0.35
CLN3-264ENST00000637985 ODAMA1E959 279 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 CCL24O00175 119 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 SLC33A1O00400 549 aaPredicted RBP12.85□□□□□ -0.35
CLN3-264ENST00000637985 MMP23AO75900 390 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 JTBO76095 146 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 CDK2P24941 298 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 RAB25P57735 213 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 CDK5R1Q15078 307 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 KRBOX4Q5JUW0 171 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 TTC23Q5W5X9 447 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 ZNF695Q8IW36 515 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 ABHD12Q8N2K0 398 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 OR4P4Q8NGL7 312 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 ZNF596Q8TC21 504 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 GPER1Q99527 375 aa12.85□□□□□ -0.35
CLN3-264ENST00000637985 CD34P28906 385 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 PTGFRP43088 359 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 OR3A4PP47883 348 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 ETV1P50549 477 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 BDH1Q02338 343 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 PRAMEF5Q5TYX0 476 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 OVCH2Q7RTZ1 564 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 PACRGLQ8N7B6 248 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 SETD9Q8NE22 299 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 OR51T1Q8NGJ9 327 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 OR5M8Q8NGP6 311 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 RGP1Q92546 391 aaPredicted RBP12.84□□□□□ -0.35
CLN3-264ENST00000637985 CREB3L1Q96BA8 519 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 ISOC1Q96CN7 298 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 COQ2Q96H96 371 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 NCOR1P1Q9H4R4 102 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 OR6C3Q9NZP0 311 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 DPM3Q9P2X0 92 aa12.84□□□□□ -0.35
CLN3-264ENST00000637985 DIMT1Q9UNQ2 313 aaKnown RBP12.84□□□□□ -0.35
CLN3-264ENST00000637985 EXOSC1Q9Y3B2 195 aaKnown RBP12.84□□□□□ -0.35
CLN3-264ENST00000637985 RBMY1BA6NDE4 496 aaKnown RBP12.83□□□□□ -0.36
CLN3-264ENST00000637985 RBMY1EA6NEQ0 496 aaKnown RBP12.83□□□□□ -0.36
CLN3-264ENST00000637985 ZNF729A6NN14 1252 aaPredicted RBP12.83□□□□□ -0.36
CLN3-264ENST00000637985 SEC14L6B5MCN3 397 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 H0YJX3 145 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 GABRPO00591 440 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 OGG1O15527 345 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 IGLV1-47P01700 117 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 RBMY1DP0C7P1 496 aaKnown RBP12.83□□□□□ -0.36
CLN3-264ENST00000637985 FRMD6-AS1P0C7T7 363 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 MYL12AP19105 171 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 SOX2P48431 317 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 ARHGDIBP52566 201 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 MED21Q13503 144 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 IL13RA2Q14627 380 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 C9orf152Q5JTZ5 239 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 ASCL4Q6XD76 172 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 SATL1Q86VE3 508 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 ZNF565Q8N9K5 539 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 OR4D6Q8NGJ1 314 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 OR51A2Q8NGJ7 313 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 CNIH3Q8TBE1 160 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 TNFAIP8L1Q8WVP5 186 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 TMEM106AQ96A25 262 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 BABAM2Q9NXR7 383 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 TAS2R4Q9NYW5 299 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 ALMS1Q8TCU4 4167 aa12.83□□□□□ -0.36
CLN3-264ENST00000637985 A0A087X0M5 115 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 A0A1B0GX30 115 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 LEUTXA8MZ59 168 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 BRS3P32247 399 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 CEACAM3P40198 252 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 KCNJ3P48549 501 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 VEGFCP49767 419 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 PRRX1P54821 245 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 PPP3R1P63098 170 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 PAX5Q02548 391 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 ATXN7L3Q14CW9 347 aaPredicted RBP12.82□□□□□ -0.36
CLN3-264ENST00000637985 RSU1Q15404 277 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 OR2G6Q5TZ20 316 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 XAF1Q6GPH4 301 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 BAIAP2L2Q6UXY1 529 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms