RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SWI5Q1ZZU3 235 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 TMEM30BQ3MIR4 351 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 C4orf46Q504U0 113 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 AADACL3Q5VUY0 350 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 STUMQ69YW2 141 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 Q6ZPA2 131 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 LYG2Q86SG7 212 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 SLC38A6Q8IZM9 456 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 FAM185AQ8N0U4 392 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 MUC15Q8N387 334 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 ZNF843Q8N446 348 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 OR5D13Q8NGL4 314 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 DYRK2Q92630 601 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 DACT3Q96B18 629 aaPredicted RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 MOB3AQ96BX8 217 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 PIK3IP1Q96FE7 263 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 SDSLQ96GA7 329 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 ST6GAL2Q96JF0 529 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 SNX22Q96L94 193 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 CISD1Q9NZ45 108 aaKnown RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 GPR132Q9UNW8 380 aa8.88□□□□□ -0.99
CLN3-248ENST00000636355 C14orf166Q9Y224 244 aaKnown RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 KLF2Q9Y5W3 355 aaPredicted RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 FLNBO75369 2602 aaKnown RBP8.88□□□□□ -0.99
CLN3-248ENST00000636355 DSCAMO60469 2012 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 IGKV1D-17A0A075B6S4 117 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 A0A0B4J2A0 478 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 NKX6-3A6NJ46 265 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 RFPL4AA6NLU0 287 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 RFPL4AL1F8VTS6 287 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 HSPB6O14558 160 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 MGST3O14880 152 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 WNT9BO14905 357 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 TUSC2O75896 110 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 DUS4LO95620 317 aaKnown RBP8.87□□□□□ -0.99
CLN3-248ENST00000636355 HLA-AP01891 365 aaKnown RBP8.87□□□□□ -0.99
CLN3-248ENST00000636355 VSIG10L2P0DP72 767 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 PSG2P11465 335 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 EGR1P18146 543 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 ERP29P30040 261 aaKnown RBP8.87□□□□□ -0.99
CLN3-248ENST00000636355 PRDX2P32119 198 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 HERV-K104P61576 105 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 DHODHQ02127 395 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 COL10A1Q03692 680 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 DHRS2Q13268 280 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 MSMO1Q15800 293 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 DTX2Q86UW9 622 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 BATF2Q8N1L9 274 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 ANGPTL6Q8NI99 470 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 PLPPR1Q8TBJ4 325 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 MARCH1Q8TCQ1 289 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 MAFIPQ8WZ33 124 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 ZNF2Q9BSG1 426 aaPredicted RBP8.87□□□□□ -0.99
CLN3-248ENST00000636355 FXYD6Q9H0Q3 95 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 CLEC4MQ9H2X3 399 aaPredicted RBP8.87□□□□□ -0.99
CLN3-248ENST00000636355 KCNIP1Q9NZI2 227 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 ZNF69Q9UC07 566 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 OR14J1Q9UGF5 321 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 SHPKQ9UHJ6 478 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 ABCA4P78363 2273 aa8.87□□□□□ -0.99
CLN3-248ENST00000636355 MEIKINA0A087WXM9 373 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 TRBV6-7A0A0A0MS04 114 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 TRAV38-1A0A0B4J264 116 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 FAM221AA4D161 298 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 OOEPA6NGQ2 149 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 OR5H14A6NHG9 310 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 LGALS8O00214 317 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 NDUFA2O43678 99 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 PSPNO60542 156 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 B3GALNT1O75752 331 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 SNAPC5O75971 98 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 PPYP01298 95 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 WNT2P09544 360 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 GIPP09681 153 aaPredicted RBP8.86□□□□□ -0.99
CLN3-248ENST00000636355 HLA-GP17693 338 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 ZBTB25P24278 435 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 RND3P61587 244 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 ATXN7L3Q14CW9 347 aaPredicted RBP8.86□□□□□ -0.99
CLN3-248ENST00000636355 PDCD1Q15116 288 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 MST1LQ2TV78 715 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 CR1LQ2VPA4 569 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 BRICD5Q6PL45 260 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 C17orf107Q6ZR85 190 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 TMED4Q7Z7H5 227 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 CD177Q8N6Q3 437 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 ASCC1Q8N9N2 400 aaKnown RBP8.86□□□□□ -0.99
CLN3-248ENST00000636355 CCDC71LQ8N9Z2 235 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 MITD1Q8WV92 249 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 KIRREL1Q96J84 757 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 LURAP1Q96LR2 239 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 PHB2Q99623 299 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 VRK1Q99986 396 aaPredicted RBP8.86□□□□□ -0.99
CLN3-248ENST00000636355 SEC22CQ9BRL7 303 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 TOLLIPQ9H0E2 274 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 C5orf66Q9H5L9 145 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 CBLN4Q9NTU7 201 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 LPAR3Q9UBY5 353 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 TRAPPC2LQ9UL33 140 aa8.86□□□□□ -0.99
CLN3-248ENST00000636355 IGHV3-64DA0A0J9YX35 117 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 C9orf170A2RU37 121 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms