RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 PAN3Q58A45 887 aaKnown RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 OLFML2AQ68BL7 652 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 FAHD2BQ6P2I3 314 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 C1orf229Q6ZS94 237 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 SNX29P2Q8IUI4 249 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 ZNF561Q8N587 486 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 ASCC1Q8N9N2 400 aaKnown RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 FAHD2AQ96GK7 314 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 SHARPINQ9H0F6 387 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 RABL2AQ9UBK7 228 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 ELF5Q9UKW6 265 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 RABL2BQ9UNT1 228 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 POLR3KQ9Y2Y1 108 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 UBE2QL1A1L167 161 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 NKX6-3A6NJ46 265 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 SERPINE3A8MV23 424 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 SIGLEC5O15389 551 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 OR3A1P47881 315 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 IL13RA1P78552 427 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 HACD4Q5VWC8 232 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 PYHIN1Q6K0P9 492 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 SLC36A1Q7Z2H8 476 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 C15orf40Q8WUR7 153 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 DACT3Q96B18 629 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-207ENST00000597136 MED30Q96HR3 178 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 CHST6Q9GZX3 395 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 PPA2Q9H2U2 334 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 K7N7A8 449 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 PITPNAQ00169 270 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 RBM39Q14498 530 aaKnown RBP12.39□□□□□ -0.43
TRIM28-207ENST00000597136 FAM120AOSQ5T036 256 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 DCAF12L2Q5VW00 463 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 OR4S1Q8NGB4 309 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 NEK7Q8TDX7 302 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 DYRK2Q92630 601 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 GCDHQ92947 438 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-207ENST00000597136 SNX22Q96L94 193 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 TMPRSS13Q9BYE2 586 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 AK3Q9UIJ7 227 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 INSIG2Q9Y5U4 225 aa12.39□□□□□ -0.43
TRIM28-207ENST00000597136 LOC105371242A0A075B767 164 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 NDUFB3O43676 98 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 CA11O75493 328 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 TK1P04183 234 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 PNLIPRP3Q17RR3 467 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 PYDC2Q56P42 97 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 BTN2A1Q7KYR7 527 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 OR8H2Q8N162 312 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 SRRQ9GZT4 340 aa12.38□□□□□ -0.43
TRIM28-207ENST00000597136 IGHV2-70DA0A0C4DH43 119 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 MEIOCA2RUB1 952 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 CTDSPLO15194 276 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 CSN2P05814 226 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 PRSS3P35030 304 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 KCNJ3P48549 501 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 NPY4RP50391 375 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 ZNF846Q147U1 533 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 ATXN7L3Q14CW9 347 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-207ENST00000597136 GRK1Q15835 563 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 TMEM185AQ8NFB2 350 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 OR5D13Q8NGL4 314 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 PPP1R35Q8TAP8 253 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 PLPPR1Q8TBJ4 325 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 NUDCD2Q8WVJ2 157 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 WDR12Q9GZL7 423 aaKnown RBP12.37□□□□□ -0.43
TRIM28-207ENST00000597136 FAM234AQ9H0X4 552 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 C7orf69Q9H7B7 122 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 ETAA1Q9NY74 926 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 SLC25A10Q9UBX3 287 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-207ENST00000597136 OPN4Q9UHM6 478 aa12.37□□□□□ -0.43
TRIM28-207ENST00000597136 PPIAL4CA0A0B4J2A2 164 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 KIR2DS1A0A191URI9 304 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 MGST3O14880 152 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 SSX5O60225 188 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 CD3GP09693 182 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 NDUFB7P17568 137 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 GNG2P59768 71 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 DGCR2P98153 550 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 PAX5Q02548 391 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 GUCA2AQ02747 115 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 ARFRP1Q13795 201 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 LRRC10Q5BKY1 277 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 ZNF497Q6ZNH5 498 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 GDPD1Q8N9F7 314 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 GPX8Q8TED1 209 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 COQ2Q96H96 371 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 SDHCQ99643 169 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-207ENST00000597136 CMSS1Q9BQ75 279 aaKnown RBP12.36□□□□□ -0.43
TRIM28-207ENST00000597136 HDHD3Q9BSH5 251 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-207ENST00000597136 SCPEP1Q9HB40 452 aa12.36□□□□□ -0.43
TRIM28-207ENST00000597136 GABARAPH6UMI1 98 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 SULT1C2O00338 296 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 GSTZ1O43708 216 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 CRLF1O75462 422 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 NAPSAO96009 420 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 LPLP06858 475 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 PPP5CP53041 499 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 MRPS10P82664 201 aaKnown RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 PAX8Q06710 450 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms