RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CGB7P0DN87 165 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 HTR1DP28221 377 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 DYNLT3P51808 116 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 MLLT11Q13015 90 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-206ENST00000595974 TPBGQ13641 420 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 TBCEQ15813 527 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-206ENST00000595974 FAM189A2Q15884 450 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 LY6EQ16553 131 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 C17orf58Q2M2W7 97 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 FAM27D1Q5T7N8 215 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 LIPKQ5VXJ0 399 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 SLC35E4Q6ICL7 350 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 OR13A1Q8NGR1 328 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 PIFOQ8TCI5 191 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 RANBP3Q9H6Z4 567 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-206ENST00000595974 LINC00574Q9H8X3 128 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 CALYQ9NYX4 217 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 ZNF581Q9P0T4 197 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 GHRLQ9UBU3 117 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A10PA6NDY2 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A18PA6NE21 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A16PA6NEW6 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A20PA6NIJ5 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A7PA6NKC0 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A22PA8MWA6 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A12PA8MX19 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A5PA8MXJ8 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A23PA8MXZ1 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 IGLV1-47P01700 117 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 UCHL1P09936 223 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A15PP0C7V4 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A13PP0C7W8 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A14PP0C7W9 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 FAM90A24PP0C7X0 464 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 HSMCR30P0CW71 290 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 PSMA1P25786 263 aaKnown RBP13.09□□□□□ -0.31
TRIM28-206ENST00000595974 GDNFP39905 211 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 GP2P55259 537 aaKnown RBP13.09□□□□□ -0.31
TRIM28-206ENST00000595974 TRAM1Q15629 374 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 HSD17B12Q53GQ0 312 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 PLA1AQ53H76 456 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 ATAD3CQ5T2N8 411 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 BAIAP2L2Q6UXY1 529 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 CREB3L1Q96BA8 519 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 KIRREL1Q96J84 757 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 ZNF286AQ9HBT8 521 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 RCC2Q9P258 522 aaKnown RBP13.09□□□□□ -0.31
TRIM28-206ENST00000595974 PITPNC1Q9UKF7 332 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 TCF19Q9Y242 345 aa13.09□□□□□ -0.31
TRIM28-206ENST00000595974 TMEM30CPA0ZSE6 113 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 FAM172BPA6NC97 362 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 UBBP0CG47 229 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 MGMTP16455 207 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 CPEP16870 476 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 PROK1P58294 105 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 HLA-DRB5Q30154 266 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 GLT8D1Q68CQ7 371 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 CEACAM19Q7Z692 300 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 LRRTM1Q86UE6 522 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 OR10A7Q8NGE5 316 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 OR4C13Q8NGP0 309 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 MRGPRDQ8TDS7 321 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 NEK7Q8TDX7 302 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 Q96M66 194 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 NPFFR1Q9GZQ6 430 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 CST11Q9H112 138 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 Q9H521 79 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 DPM3Q9P2X0 92 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 HILPDAQ9Y5L2 63 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 MGAM2Q2M2H8 2515 aa13.08□□□□□ -0.32
TRIM28-206ENST00000595974 NBEAL1Q6ZS30 2694 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 TRRAPQ9Y4A5 3859 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 NPIPB11E5RHQ5 1161 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 H3BUI4 141 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 F2RL2O00254 374 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 TOR1AO14656 332 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 CHST1O43916 411 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 CRTAPO75718 401 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-206ENST00000595974 SRMP19623 302 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 NFYBP25208 207 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 GABRA5P31644 462 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 CEACAM3P40198 252 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 ARHGDIBP52566 201 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 PRRX1P54821 245 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 GABARAPL2P60520 117 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 RBM39Q14498 530 aaKnown RBP13.07□□□□□ -0.32
TRIM28-206ENST00000595974 C1orf100Q5SVJ3 147 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 BRICD5Q6PL45 260 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 ZNF367Q7RTV3 350 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 DTX3Q8N9I9 347 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 TMEM104Q8NE00 496 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 OR9G1Q8NH87 305 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 TMEM203Q969S6 136 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 MGLLQ99685 303 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 CITED1Q99966 193 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 SELENOIQ9C0D9 397 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 BANF2Q9H503 90 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 ZNF696Q9H7X3 374 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 IDI2-AS1Q9NZ38 188 aa13.07□□□□□ -0.32
TRIM28-206ENST00000595974 FBLN5Q9UBX5 448 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms