RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 PCDHB16Q9NRJ7 776 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 ABCB10Q9NRK6 738 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 MRPS28Q9Y2Q9 187 aaKnown RBP12.19□□□□□ -0.46
TRIM28-205ENST00000595028 TPRKBQ9Y3C4 175 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 A0A087X0M5 115 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 KBTBD11-OT1A0A1B0GTJ5 212 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 A0A1B0GX30 115 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 MEGF11A6BM72 1044 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 IL1AP01583 271 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 CGB3P0DN86 165 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 CGB7P0DN87 165 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 GTF2F2P13984 249 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 HTR1DP28221 377 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 GABRA5P31644 462 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 KRTAP10-3P60369 221 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 GPR176Q14439 515 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 INSL4Q14641 139 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 MED22Q15528 200 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 AWAT2Q6E213 333 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 SLC35E4Q6ICL7 350 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 GLIPR1L1Q6UWM5 242 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 LYPD6Q86Y78 171 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 ABHD12Q8N2K0 398 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 MS4A15Q8N5U1 240 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 ZNF596Q8TC21 504 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 KIRREL1Q96J84 757 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 NPFFR1Q9GZQ6 430 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 CALYQ9NYX4 217 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 HILPDAQ9Y5L2 63 aa12.18□□□□□ -0.46
TRIM28-205ENST00000595028 F2RL2O00254 374 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 RGS10O43665 173 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 IGLV1-47P01700 117 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 JUNBP17275 347 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-205ENST00000595028 RAB13P51153 203 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 TMED9Q9BVK6 235 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 LINC00574Q9H8X3 128 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 RCC2Q9P258 522 aaKnown RBP12.17□□□□□ -0.46
TRIM28-205ENST00000595028 DPM3Q9P2X0 92 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 FBLN5Q9UBX5 448 aa12.17□□□□□ -0.46
TRIM28-205ENST00000595028 TMEM30CPA0ZSE6 113 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 A6NDX4 124 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 SC5DO75845 299 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 CRHBPP24387 322 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 SSTR5P35346 364 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 KIR2DS4P43632 304 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 GPR50Q13585 617 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 HLA-DRB5Q30154 266 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 ACSM3Q53FZ2 586 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 UTF1Q5T230 341 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 ATAD3CQ5T2N8 411 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 FAM27D1Q5T7N8 215 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 CCBE1Q6UXH8 406 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-205ENST00000595028 UNQ9370/PRO34162Q6UXP9 181 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 ZNF565Q8N9K5 539 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 MRGPRDQ8TDS7 321 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 PHYHIPQ92561 330 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 UFD1Q92890 307 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 MRPS24Q96EL2 167 aaKnown RBP12.16□□□□□ -0.46
TRIM28-205ENST00000595028 UQCC2Q9BRT2 126 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 SPACA1Q9HBV2 294 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 PITPNC1Q9UKF7 332 aa12.16□□□□□ -0.46
TRIM28-205ENST00000595028 NPIPB11E5RHQ5 1161 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 ATP6V1G2O95670 118 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 MGMTP16455 207 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 NFYBP25208 207 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 EFNB2P52799 333 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 GP2P55259 537 aaKnown RBP12.15□□□□□ -0.46
TRIM28-205ENST00000595028 RBM48Q5RL73 367 aaKnown RBP12.15□□□□□ -0.46
TRIM28-205ENST00000595028 LIPKQ5VXJ0 399 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 C11orf88Q6PI97 169 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 PRSS48Q7RTY5 328 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 TMEM219Q86XT9 240 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 TMEM104Q8NE00 496 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 OR9G1Q8NH87 305 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 OR2T6Q8NHC8 308 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 NEK7Q8TDX7 302 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 CNBD2Q96M20 576 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 IDI2-AS1Q9NZ38 188 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 SIGLEC9Q9Y336 463 aa12.15□□□□□ -0.46
TRIM28-205ENST00000595028 FAM90A10PA6NDY2 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A18PA6NE21 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A16PA6NEW6 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A20PA6NIJ5 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A7PA6NKC0 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A22PA8MWA6 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A12PA8MX19 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A5PA8MXJ8 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A23PA8MXZ1 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 LEUTXA8MZ59 168 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 TOR1AO14656 332 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A15PP0C7V4 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A13PP0C7W8 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A14PP0C7W9 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 FAM90A24PP0C7X0 464 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 MLLT11Q13015 90 aaPredicted RBP12.14□□□□□ -0.47
TRIM28-205ENST00000595028 HSD17B12Q53GQ0 312 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 LRRTM1Q86UE6 522 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 CREB3L1Q96BA8 519 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 Q96M66 194 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 CCDC90BQ9GZT6 254 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms