RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 A0A1W2PR64 198 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 A0A1W2PRV1 198 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 hADV38S2A0JD32 116 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 FUOMA2VDF0 154 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 SLC33A1O00400 549 aaPredicted RBP10.1□□□□□ -0.79
UPF1-203ENST00000594504 CSN2P05814 226 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 UBBP0CG47 229 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 CALRP27797 417 aaKnown RBP10.1□□□□□ -0.79
UPF1-203ENST00000594504 ERP29P30040 261 aaKnown RBP10.1□□□□□ -0.79
UPF1-203ENST00000594504 P2RX3P56373 397 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 EDDM3AQ14507 147 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 HABP2Q14520 560 aaPredicted RBP10.1□□□□□ -0.79
UPF1-203ENST00000594504 BEAN1Q3B7T3 259 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 C1orf100Q5SVJ3 147 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 CCBE1Q6UXH8 406 aaPredicted RBP10.1□□□□□ -0.79
UPF1-203ENST00000594504 ZNF782Q6ZMW2 699 aaPredicted RBP10.1□□□□□ -0.79
UPF1-203ENST00000594504 IFT22Q9H7X7 185 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 A0A087WXM4 84 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 CD37P11049 281 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 MPV17LQ2QL34 196 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 SYT6Q5T7P8 510 aaPredicted RBP10.09□□□□□ -0.79
UPF1-203ENST00000594504 TSPAN14Q8NG11 270 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 OR4C13Q8NGP0 309 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 OR2T6Q8NHC8 308 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 CFHR4Q92496 578 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 CST11Q9H112 138 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 HEXA-AS1Q9H8Q6 139 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 LINC00312Q9Y6C7 94 aa10.09□□□□□ -0.79
UPF1-203ENST00000594504 TRAV1-2A0A0B4J238 106 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 TRAV24A0A0B4J272 114 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 A0A1W2PP11 408 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 GEMIN2O14893 280 aaKnown RBP10.08□□□□□ -0.8
UPF1-203ENST00000594504 SLC22A1O15245 554 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 PLXNB1O43157 2135 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 OR7C1O76099 320 aaPredicted RBP10.08□□□□□ -0.8
UPF1-203ENST00000594504 RBP4P02753 201 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 OPN1MWP04001 364 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 ZNF728P0DKX0 622 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 OPN1MW2P0DN77 364 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 OPN1MW3P0DN78 364 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 CD28P10747 220 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 MGMTP16455 207 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 JUNBP17275 347 aaPredicted RBP10.08□□□□□ -0.8
UPF1-203ENST00000594504 MYL9P24844 172 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 HTR2CP28335 458 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 RANBP1P43487 201 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 KCNJ3P48549 501 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 PSMD7P51665 324 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 DLX6P56179 175 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 LGALS4P56470 323 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 NEDD8Q15843 81 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 NSUN5P1Q3KNT7 163 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 PAN3Q58A45 887 aaKnown RBP10.08□□□□□ -0.8
UPF1-203ENST00000594504 LDLRAD2Q5SZI1 272 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 SAMD5Q5TGI4 173 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 TCF23Q7RTU1 214 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 TPRX1Q8N7U7 411 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 OR6M1Q8NGM8 313 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 ZNF714Q96N38 554 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 VCX3AQ9NNX9 186 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 STUB1Q9UNE7 303 aa10.08□□□□□ -0.8
UPF1-203ENST00000594504 TRGV10A0A0A0MS01 117 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A10PA6NDY2 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A18PA6NE21 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A16PA6NEW6 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A20PA6NIJ5 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A8PA6NJQ4 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A7PA6NKC0 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 C17orf98A8MV24 154 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A22PA8MWA6 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A12PA8MX19 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A5PA8MXJ8 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A23PA8MXZ1 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 SLC17A2O00624 439 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 HSPB6O14558 160 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 PDCD5O14737 125 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 CRTAPO75718 401 aaPredicted RBP10.07□□□□□ -0.8
UPF1-203ENST00000594504 ARG1P05089 322 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A15PP0C7V4 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A13PP0C7W8 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A14PP0C7W9 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM90A24PP0C7X0 464 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 FGF9P31371 208 aaPredicted RBP10.07□□□□□ -0.8
UPF1-203ENST00000594504 GLIPR1P48060 266 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 PAX5Q02548 391 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 AESQ08117 197 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 ATXN7L3Q14CW9 347 aaPredicted RBP10.07□□□□□ -0.8
UPF1-203ENST00000594504 FAM189A2Q15884 450 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 OXLD1Q5BKU9 147 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 KRBOX4Q5JUW0 171 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 Q6ZS46 218 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 TRAPPC6BQ86SZ2 158 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 TMEM219Q86XT9 240 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 SUMF2Q8NBJ7 301 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 TMEM104Q8NE00 496 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 COQ2Q96H96 371 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 Q96M66 194 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 GFI1Q99684 422 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 DPCDQ9BVM2 203 aaPredicted RBP10.07□□□□□ -0.8
UPF1-203ENST00000594504 BARHL1Q9BZE3 327 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms