RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CLINT1Q14677 625 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 CFAP161Q6P656 301 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 BRICD5Q6PL45 260 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 SLC38A6Q8IZM9 456 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 GIMAP1Q8WWP7 306 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 POLEQ07864 2286 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 TRIM77I1YAP6 450 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 ARPC5O15511 151 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 LALBAP00709 142 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 CD3DP04234 171 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 RPLP1P05386 114 aaKnown RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 TRAPPC2P0DI81 140 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 TRAPPC2BP0DI82 140 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 PRDX2P32119 198 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 BRS3P32247 399 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 SUB1P53999 127 aaKnown RBP eCLIP8.49□□□□□ -1.05
LIG3-216ENST00000593099 SNAI3Q3KNW1 292 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 C4orf17Q53FE4 359 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 ARRDC1Q8N5I2 433 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 RFLNBQ8N5W9 214 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 ERGIC1Q969X5 290 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 AKR1E2Q96JD6 320 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 COMMD5Q9GZQ3 224 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 PLSCR4Q9NRQ2 329 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 SLC25A10Q9UBX3 287 aaPredicted RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 DENND4CQ5VZ89 1909 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 TRAV8-7A0A075B6U6 113 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 MBD3L4A6NDZ8 208 aaPredicted RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 MBD3L3A6NE82 208 aaPredicted RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 MBD3L5A6NJ08 208 aaPredicted RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 LYPD3O95274 346 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 CEACAM6P40199 344 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 CCR6P51684 374 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 GNB1P62873 340 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 RNFT1Q5M7Z0 435 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 MBD3L2Q8NHZ7 208 aaPredicted RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 SMIM4Q8WVI0 70 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 MRPL13Q9BYD1 178 aaKnown RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 C11orf54Q9H0W9 315 aaPredicted RBP8.49□□□□□ -1.05
LIG3-216ENST00000593099 FAM208BQ5VWN6 2430 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 ZNF320A2RRD8 509 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 A8MXE2 369 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 GEMIN2O14893 280 aaKnown RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 RPL31P62899 125 aaKnown RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 PLA2G7Q13093 441 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 IGFBP7Q16270 282 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 TATDN3Q17R31 274 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 ZNF837Q96EG3 531 aaPredicted RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 ZNF75AQ96N20 296 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 IGKV1D-43A0A0B4J1Z2 117 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 A0A1W2PRD5 423 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 A0A1W2PRF3 423 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 A0A1W2PRM7 423 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 MEIOCA2RUB1 952 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 CTAG2O75638 210 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 KIR2DL2P43627 348 aaPredicted RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 CAMLGP49069 296 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 HMGN3Q15651 99 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 IAH1Q2TAA2 248 aaPredicted RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 VMA21Q3ZAQ7 101 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 TOR2AQ5JU69 321 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 LINC00596Q86U02 117 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 GPX8Q8TED1 209 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 NEU4Q8WWR8 484 aaPredicted RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 ADGRG7Q96K78 797 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 FAM206AQ9NX38 181 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 PSG11Q9UQ72 335 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 FBXO7Q9Y3I1 522 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 A0A1W2PPQ1 181 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 DEFB108AA8MXU0 73 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 RAB27BO00194 218 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 AGPAT2O15120 278 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 ISG15P05161 165 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 PRR30Q53SZ7 412 aaPredicted RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 KLHDC1Q8N7A1 406 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 STARD4Q96DR4 205 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 CCL13Q99616 98 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 SSUH2Q9Y2M2 353 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 ACACBO00763 2458 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 IGHV1-69-2A0A0G2JMI3 117 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 MED19A0JLT2 244 aaPredicted RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 NCBP2LA6PVI3 153 aaKnown RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 WT1P19544 449 aaPredicted RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 CHATP28329 748 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 RPL13AP40429 203 aaKnown RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 GUCA2AQ02747 115 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 OR5I1Q13606 314 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 KIF26BQ2KJY2 2108 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 TMEM229BQ8NBD8 167 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 PCNPQ8WW12 178 aaKnown RBP8.48□□□□□ -1.05
LIG3-216ENST00000593099 OCEL1Q9H607 264 aa8.48□□□□□ -1.05
LIG3-216ENST00000593099 TMEM218A2RU14 115 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 GPR31O00270 319 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 SLC25A17O43808 307 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 MMP7P09237 267 aaPredicted RBP8.47□□□□□ -1.05
LIG3-216ENST00000593099 FAM3AP98173 230 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 IL13RA2Q14627 380 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 OR13D1Q8NGV5 346 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 ZNF488Q96MN9 340 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms