RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TLN1Q9Y490 2541 aaKnown RBP11.99□□□□□ -0.49
LIG3-205ENST00000585941 DSPP15924 2871 aaKnown RBP11.99□□□□□ -0.49
LIG3-205ENST00000585941 NPIPB11E5RHQ5 1161 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 BET1O15155 118 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 OR2F2O95006 317 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 PET100P0DJ07 73 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 S100A1P23297 94 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 CCKARP32238 428 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 RND3P61587 244 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 OR2F1Q13607 317 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 PRR30Q53SZ7 412 aaPredicted RBP11.99□□□□□ -0.49
LIG3-205ENST00000585941 LRTM2Q8N967 370 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 RELL2Q8NC24 303 aaPredicted RBP11.99□□□□□ -0.49
LIG3-205ENST00000585941 OR10J5Q8NHC4 309 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 LILRB4Q8NHJ6 448 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 WIPI2Q9Y4P8 454 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 MAB21L2Q9Y586 359 aa11.99□□□□□ -0.49
LIG3-205ENST00000585941 TRBV6-7A0A0A0MS04 114 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 hCG_1807616A0A1W2PRN6 198 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 ATP6V1G2-DDX39BF2Z307 99 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 RP2O75695 350 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 MPC2O95563 127 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 S100GP29377 79 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 HERPUD1Q15011 391 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 PRAMEF6Q5VXH4 476 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 LILRB1Q8NHL6 650 aaPredicted RBP11.98□□□□□ -0.49
LIG3-205ENST00000585941 KIRREL1Q96J84 757 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 DMRTA2Q96SC8 542 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 ARL6Q9H0F7 186 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 NGBQ9NPG2 151 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 MBNL3Q9NUK0 354 aaKnown RBP11.98□□□□□ -0.49
LIG3-205ENST00000585941 UBQLN2Q9UHD9 624 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 FBXO9Q9UK97 447 aaPredicted RBP11.98□□□□□ -0.49
LIG3-205ENST00000585941 TRAPPC2LQ9UL33 140 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 TNFSF18Q9UNG2 199 aa11.98□□□□□ -0.49
LIG3-205ENST00000585941 PIGBOS1A0A0B4J2F0 54 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 TMEM30CPA0ZSE6 113 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 GPR31O00270 319 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 ADAP1O75689 374 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 HTR2BP41595 481 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 TMEM187Q14656 261 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 SLC35E4Q6ICL7 350 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 C20orf204Q6ZNR8 217 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 ZNF826PQ6ZT77 177 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 ACOT7LQ6ZUV0 252 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 SLC7A5P1Q8MH63 180 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 INO80EQ8NBZ0 244 aaPredicted RBP11.97□□□□□ -0.49
LIG3-205ENST00000585941 UFSP2Q9NUQ7 469 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 RDH8Q9NYR8 311 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 OR14J1Q9UGF5 321 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 SH3BGRL2Q9UJC5 107 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 CADP27708 2225 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 IGF2RP11717 2491 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 ATMQ13315 3056 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 IGHV3-64DA0A0J9YX35 117 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 MPPED1O15442 326 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 ZNF205O95201 554 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 RCC1P18754 421 aaPredicted RBP11.97□□□□□ -0.49
LIG3-205ENST00000585941 MSMPQ1L6U9 139 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 LRRC37A5PQ49AS3 106 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 PHLDA2Q53GA4 152 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 PCSK4Q6UW60 755 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 LIAT1Q6ZQX7 453 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 LRP11Q86VZ4 500 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 CMTM1Q8IZ96 169 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 LGI3Q8N145 548 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 KCNRGQ8N5I3 272 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 PLPPR1Q8TBJ4 325 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 LRRC29Q8WV35 223 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 SLC5A7Q9GZV3 580 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 KCNIP1Q9NZI2 227 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 ZDHHC8Q9ULC8 765 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 OR2W1Q9Y3N9 320 aa11.97□□□□□ -0.49
LIG3-205ENST00000585941 IGKV1-6A0A0C4DH72 117 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 TUBAL3A6NHL2 446 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 ZSCAN5BA6NJL1 495 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 VSTM5A8MXK1 200 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 SRRM5B3KS81 715 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 B3GALNT1O75752 331 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 HOXB5P09067 269 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 OR5AC1P0C628 307 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 SFTPCP11686 197 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 TNFSF4P23510 183 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 GNRHRP30968 328 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 GATA4P43694 442 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 PAX5Q02548 391 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 HMGN3Q15651 99 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 ESCO2Q56NI9 601 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 VHLLQ6RSH7 139 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 SLC51BQ86UW2 128 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 LDLRAD3Q86YD5 345 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 H1FOOQ8IZA3 346 aaPredicted RBP11.96□□□□□ -0.5
LIG3-205ENST00000585941 ST6GALNAC3Q8NDV1 305 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 SECTM1Q8WVN6 248 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 MRPL24Q96A35 216 aaKnown RBP11.96□□□□□ -0.5
LIG3-205ENST00000585941 MEGF10Q96KG7 1140 aa11.96□□□□□ -0.5
LIG3-205ENST00000585941 CHD3Q12873 2000 aaKnown RBP11.95□□□□□ -0.5
LIG3-205ENST00000585941 C3orf85A0A1B0GTC6 90 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 KANTRA0A1W2PQU2 76 aa11.95□□□□□ -0.5
LIG3-205ENST00000585941 WNT9BO14905 357 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms