RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ALX4Q9H161 411 aaPredicted RBP8.83□□□□□ -1
SS18-217ENST00000580958 LIME1Q9H400 295 aa8.83□□□□□ -1
SS18-217ENST00000580958 GCM1Q9NP62 436 aa8.83□□□□□ -1
SS18-217ENST00000580958 DYNLRB1Q9NP97 96 aa8.83□□□□□ -1
SS18-217ENST00000580958 CISD1Q9NZ45 108 aaKnown RBP8.83□□□□□ -1
SS18-217ENST00000580958 TREM2Q9NZC2 230 aa8.83□□□□□ -1
SS18-217ENST00000580958 MGAT4CQ9UBM8 478 aa8.83□□□□□ -1
SS18-217ENST00000580958 DNAJB11Q9UBS4 358 aa8.83□□□□□ -1
SS18-217ENST00000580958 ZNF222Q9UK12 451 aa8.83□□□□□ -1
SS18-217ENST00000580958 GPR132Q9UNW8 380 aa8.83□□□□□ -1
SS18-217ENST00000580958 ZFYVE26Q68DK2 2539 aa8.82□□□□□ -1
SS18-217ENST00000580958 KIR2DS1A0A191URI9 304 aa8.82□□□□□ -1
SS18-217ENST00000580958 CEACAM18A8MTB9 384 aa8.82□□□□□ -1
SS18-217ENST00000580958 B9A039 149 aa8.82□□□□□ -1
SS18-217ENST00000580958 IFNL4K9M1U5 179 aa8.82□□□□□ -1
SS18-217ENST00000580958 PSPNO60542 156 aa8.82□□□□□ -1
SS18-217ENST00000580958 CYB5R3P00387 301 aaPredicted RBP8.82□□□□□ -1
SS18-217ENST00000580958 PRB1P04280 392 aa8.82□□□□□ -1
SS18-217ENST00000580958 AKR1C4P17516 323 aa8.82□□□□□ -1
SS18-217ENST00000580958 CXCL3P19876 107 aa8.82□□□□□ -1
SS18-217ENST00000580958 AGAP20933 346 aa8.82□□□□□ -1
SS18-217ENST00000580958 ZBTB25P24278 435 aa8.82□□□□□ -1
SS18-217ENST00000580958 FCGR2CP31995 323 aa8.82□□□□□ -1
SS18-217ENST00000580958 PRDX2P32119 198 aa8.82□□□□□ -1
SS18-217ENST00000580958 KIR2DS4P43632 304 aa8.82□□□□□ -1
SS18-217ENST00000580958 GABRA2P47869 451 aa8.82□□□□□ -1
SS18-217ENST00000580958 OR3A1P47881 315 aa8.82□□□□□ -1
SS18-217ENST00000580958 TAS2R31P59538 309 aa8.82□□□□□ -1
SS18-217ENST00000580958 UBE2MP61081 183 aaKnown RBP8.82□□□□□ -1
SS18-217ENST00000580958 CCL8P80075 99 aa8.82□□□□□ -1
SS18-217ENST00000580958 BAMBIQ13145 260 aa8.82□□□□□ -1
SS18-217ENST00000580958 PPP1R1AQ13522 171 aa8.82□□□□□ -1
SS18-217ENST00000580958 KIR2DS1Q14954 304 aa8.82□□□□□ -1
SS18-217ENST00000580958 EFNB3Q15768 340 aa8.82□□□□□ -1
SS18-217ENST00000580958 MST1LQ2TV78 715 aa8.82□□□□□ -1
SS18-217ENST00000580958 ZNF672Q499Z4 452 aaPredicted RBP8.82□□□□□ -1
SS18-217ENST00000580958 IGSF11Q5DX21 431 aa8.82□□□□□ -1
SS18-217ENST00000580958 DHRS11Q6UWP2 260 aa8.82□□□□□ -1
SS18-217ENST00000580958 MOB1BQ7L9L4 216 aa8.82□□□□□ -1
SS18-217ENST00000580958 PEG10Q86TG7 708 aaKnown RBP8.82□□□□□ -1
SS18-217ENST00000580958 FAM90A1Q86YD7 464 aa8.82□□□□□ -1
SS18-217ENST00000580958 TGIF2LYQ8IUE0 185 aa8.82□□□□□ -1
SS18-217ENST00000580958 GAPTQ8N292 157 aa8.82□□□□□ -1
SS18-217ENST00000580958 BBC3Q96PG8 261 aaPredicted RBP8.82□□□□□ -1
SS18-217ENST00000580958 TMEM204Q9BSN7 226 aa8.82□□□□□ -1
SS18-217ENST00000580958 EGLN1Q9GZT9 426 aa8.82□□□□□ -1
SS18-217ENST00000580958 C5orf66Q9H5L9 145 aa8.82□□□□□ -1
SS18-217ENST00000580958 DCAF16Q9NXF7 216 aa8.82□□□□□ -1
SS18-217ENST00000580958 YLPM1P49750 1951 aaKnown RBP8.81□□□□□ -1
SS18-217ENST00000580958 DOCK11Q5JSL3 2073 aa8.81□□□□□ -1
SS18-217ENST00000580958 IGKV1D-17A0A075B6S4 117 aa8.81□□□□□ -1
SS18-217ENST00000580958 MEIKINA0A087WXM9 373 aa8.81□□□□□ -1
SS18-217ENST00000580958 IGKV1-6A0A0C4DH72 117 aa8.81□□□□□ -1
SS18-217ENST00000580958 TMEM30CPA0ZSE6 113 aa8.81□□□□□ -1
SS18-217ENST00000580958 H7C1Q1 480 aa8.81□□□□□ -1
SS18-217ENST00000580958 BET1O15155 118 aa8.81□□□□□ -1
SS18-217ENST00000580958 IRF2P14316 349 aa8.81□□□□□ -1
SS18-217ENST00000580958 RCC1P18754 421 aaPredicted RBP8.81□□□□□ -1
SS18-217ENST00000580958 TNFRSF1AP19438 455 aa8.81□□□□□ -1
SS18-217ENST00000580958 PI3P19957 117 aa8.81□□□□□ -1
SS18-217ENST00000580958 AADACP22760 399 aa8.81□□□□□ -1
SS18-217ENST00000580958 NFYAP23511 347 aaPredicted RBP8.81□□□□□ -1
SS18-217ENST00000580958 ECI1P42126 302 aa8.81□□□□□ -1
SS18-217ENST00000580958 KCNJ3P48549 501 aa8.81□□□□□ -1
SS18-217ENST00000580958 FXYD4P59646 89 aa8.81□□□□□ -1
SS18-217ENST00000580958 HERV-K104P61576 105 aa8.81□□□□□ -1
SS18-217ENST00000580958 SEC61A1P61619 476 aaKnown RBP8.81□□□□□ -1
SS18-217ENST00000580958 DHRS2Q13268 280 aa8.81□□□□□ -1
SS18-217ENST00000580958 HERPUD1Q15011 391 aa8.81□□□□□ -1
SS18-217ENST00000580958 SURF2Q15527 256 aaPredicted RBP8.81□□□□□ -1
SS18-217ENST00000580958 C2orf68Q2NKX9 166 aa8.81□□□□□ -1
SS18-217ENST00000580958 FAM209AQ5JX71 171 aa8.81□□□□□ -1
SS18-217ENST00000580958 SLC35E4Q6ICL7 350 aa8.81□□□□□ -1
SS18-217ENST00000580958 LYG2Q86SG7 212 aa8.81□□□□□ -1
SS18-217ENST00000580958 TCTE3Q8IZS6 198 aa8.81□□□□□ -1
SS18-217ENST00000580958 C12orf45Q8N5I9 185 aaPredicted RBP8.81□□□□□ -1
SS18-217ENST00000580958 SPICQ8N5J4 248 aa8.81□□□□□ -1
SS18-217ENST00000580958 ASCC1Q8N9N2 400 aaKnown RBP8.81□□□□□ -1
SS18-217ENST00000580958 UXS1Q8NBZ7 420 aa8.81□□□□□ -1
SS18-217ENST00000580958 OR2AK2Q8NG84 335 aa8.81□□□□□ -1
SS18-217ENST00000580958 FAM222BQ8WU58 562 aa8.81□□□□□ -1
SS18-217ENST00000580958 TOMM40LQ969M1 308 aa8.81□□□□□ -1
SS18-217ENST00000580958 TMEM230Q96A57 120 aa8.81□□□□□ -1
SS18-217ENST00000580958 COQ2Q96H96 371 aa8.81□□□□□ -1
SS18-217ENST00000580958 RTBDNQ9BSG5 229 aaPredicted RBP8.81□□□□□ -1
SS18-217ENST00000580958 SEBOXQ9HB31 216 aaPredicted RBP8.81□□□□□ -1
SS18-217ENST00000580958 DECR2Q9NUI1 292 aa8.81□□□□□ -1
SS18-217ENST00000580958 TRAPPC2LQ9UL33 140 aa8.81□□□□□ -1
SS18-217ENST00000580958 PPP1R3CQ9UQK1 317 aa8.81□□□□□ -1
SS18-217ENST00000580958 C14orf166Q9Y224 244 aaKnown RBP8.81□□□□□ -1
SS18-217ENST00000580958 NPTNQ9Y639 398 aa8.81□□□□□ -1
SS18-217ENST00000580958 SMG1Q96Q15 3661 aaKnown RBP8.81□□□□□ -1
SS18-217ENST00000580958 C9orf170A2RU37 121 aa8.8□□□□□ -1
SS18-217ENST00000580958 POM121CA8CG34 1229 aa8.8□□□□□ -1
SS18-217ENST00000580958 SMLR1H3BR10 107 aa8.8□□□□□ -1
SS18-217ENST00000580958 C19orf84I3L1E1 186 aa8.8□□□□□ -1
SS18-217ENST00000580958 ZNF737O75373 536 aa8.8□□□□□ -1
SS18-217ENST00000580958 HLA-AP01891 365 aaKnown RBP8.8□□□□□ -1
SS18-217ENST00000580958 CTSDP07339 412 aaPredicted RBP8.8□□□□□ -1
SS18-217ENST00000580958 ZNF728P0DKX0 622 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms