RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 GABRA5P31644 462 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 KRTAP10-3P60369 221 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 PAX5Q02548 391 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 ATAD3CQ5T2N8 411 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 CALYQ9NYX4 217 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 F2RL2O00254 374 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 TOR1AO14656 332 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 CGB3P0DN86 165 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 CGB7P0DN87 165 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 JUNBP17275 347 aaPredicted RBP19.27■□□□□ 0.68
SHMT1-206ENST00000579558 DYNLT3P51808 116 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 UNQ9370/PRO34162Q6UXP9 181 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 MRGPRDQ8TDS7 321 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 KIRREL1Q96J84 757 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 NPFFR1Q9GZQ6 430 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 RANBP3Q9H6Z4 567 aaPredicted RBP19.27■□□□□ 0.68
SHMT1-206ENST00000579558 TCF7L1Q9HCS4 588 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 DPM3Q9P2X0 92 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 PITPNC1Q9UKF7 332 aa19.27■□□□□ 0.68
SHMT1-206ENST00000579558 MEGF11A6BM72 1044 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 A6NDX4 124 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 IGLV1-47P01700 117 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 CRHBPP24387 322 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 FAM27D1Q5T7N8 215 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 CCBE1Q6UXH8 406 aaPredicted RBP19.26■□□□□ 0.67
SHMT1-206ENST00000579558 TMEM219Q86XT9 240 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 LYPD6Q86Y78 171 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 NEK7Q8TDX7 302 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 UFD1Q92890 307 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 MRPS24Q96EL2 167 aaKnown RBP19.26■□□□□ 0.67
SHMT1-206ENST00000579558 CNBD2Q96M20 576 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 UQCC2Q9BRT2 126 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 CCDC90BQ9GZT6 254 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 IDI2-AS1Q9NZ38 188 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 FBLN5Q9UBX5 448 aa19.26■□□□□ 0.67
SHMT1-206ENST00000579558 A0A087X0M5 115 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 TRAV39A0A0B4J263 110 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 A0A1B0GX30 115 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 TMEM30CPA0ZSE6 113 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 IL1AP01583 271 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 KIR2DS4P43632 304 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 PRRX1P54821 245 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 GPR50Q13585 617 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 LIPKQ5VXJ0 399 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 BANF2Q9H503 90 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 SIGLEC9Q9Y336 463 aa19.25■□□□□ 0.67
SHMT1-206ENST00000579558 LEUTXA8MZ59 168 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 ATP6V1G2O95670 118 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 HSMCR30P0CW71 290 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 GP2P55259 537 aaKnown RBP19.24■□□□□ 0.67
SHMT1-206ENST00000579558 LTC4SQ16873 150 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 HLA-DRB5Q30154 266 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 RBM48Q5RL73 367 aaKnown RBP19.24■□□□□ 0.67
SHMT1-206ENST00000579558 UTF1Q5T230 341 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 CEACAM19Q7Z692 300 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 OR2T6Q8NHC8 308 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 RFESDQ8TAC1 157 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 CREB3L1Q96BA8 519 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 LINC00574Q9H8X3 128 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 SPACA1Q9HBV2 294 aa19.24■□□□□ 0.67
SHMT1-206ENST00000579558 CRTAPO75718 401 aaPredicted RBP19.23■□□□□ 0.67
SHMT1-206ENST00000579558 MGMTP16455 207 aa19.23■□□□□ 0.67
SHMT1-206ENST00000579558 SSTR5P35346 364 aa19.23■□□□□ 0.67
SHMT1-206ENST00000579558 CEACAM3P40198 252 aa19.23■□□□□ 0.67
SHMT1-206ENST00000579558 RBM39Q14498 530 aaKnown RBP19.23■□□□□ 0.67
SHMT1-206ENST00000579558 PRSS48Q7RTY5 328 aa19.23■□□□□ 0.67
SHMT1-206ENST00000579558 OR9G1Q8NH87 305 aa19.23■□□□□ 0.67
SHMT1-206ENST00000579558 PHYHIPQ92561 330 aa19.23■□□□□ 0.67
SHMT1-206ENST00000579558 SELENOIQ9C0D9 397 aa19.23■□□□□ 0.67
SHMT1-206ENST00000579558 NPIPB11E5RHQ5 1161 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 BUB1B-PAK6H3BSN5 160 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 TIMM23O14925 209 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 ARHGDIBP52566 201 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 EFNB2P52799 333 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 HSD17B12Q53GQ0 312 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 LRRTM1Q86UE6 522 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 DTX3Q8N9I9 347 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 TMEM104Q8NE00 496 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 LEAP2Q969E1 77 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 TMEM203Q969S6 136 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 ISYNA1Q9NPH2 558 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 RCC2Q9P258 522 aaKnown RBP19.22■□□□□ 0.67
SHMT1-206ENST00000579558 RAB26Q9ULW5 256 aa19.22■□□□□ 0.67
SHMT1-206ENST00000579558 MCRIP1C9JLW8 97 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 SC5DO75845 299 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 IGHV3-7P01780 117 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 GZMHP20718 246 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 BRS3P32247 399 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 TPBGQ13641 420 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 TPTE2P1Q5T6R2 138 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 GLT8D1Q68CQ7 371 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 C11orf88Q6PI97 169 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 OR10A7Q8NGE5 316 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 CCDC107Q8WV48 283 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 MMP28Q9H239 520 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 GHRLQ9UBU3 117 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 BLOC1S6Q9UL45 172 aa19.21■□□□□ 0.67
SHMT1-206ENST00000579558 FAM90A10PA6NDY2 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A18PA6NE21 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A16PA6NEW6 464 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms