RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 GABPB1Q06547 395 aaPredicted RBP14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 HLA-DRB5Q30154 266 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 AWAT2Q6E213 333 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 MYDGFQ969H8 173 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 TMED9Q9BVK6 235 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 MND1Q9BWT6 205 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 BANF2Q9H503 90 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 ZNF702PQ9H963 129 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 IDI2-AS1Q9NZ38 188 aa14.3□□□□□ -0.12
CTDNEP1-207ENST00000572043 LEUTXA8MZ59 168 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 ZNF780AO75290 641 aaPredicted RBP14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 TSPAN15O95858 294 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 IL1AP01583 271 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 IGLV1-47P01700 117 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 CGB3P0DN86 165 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 CGB7P0DN87 165 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 CD34P28906 385 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 GNG10P50151 68 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 DYNLT3P51808 116 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 PRRX1P54821 245 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 MED22Q15528 200 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 ARSJQ5FYB0 599 aaPredicted RBP14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 NHLRC3Q5JS37 347 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 FAM27D1Q5T7N8 215 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 Q6ZTK2 550 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 UBALD1Q8TB05 177 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 CCDC107Q8WV48 283 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 PCDHB16Q9NRJ7 776 aa14.29□□□□□ -0.12
CTDNEP1-207ENST00000572043 TMEM30CPA0ZSE6 113 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 BUB1B-PAK6H3BSN5 160 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 CD1AP06126 327 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 MAPK3P27361 379 aaPredicted RBP14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 KCNJ3P48549 501 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 BLCAPP62952 87 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 GPR176Q14439 515 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 HERPUD1Q15011 391 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 SPHARQ15513 63 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 MPV17LQ2QL34 196 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 ACSM3Q53FZ2 586 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 FBLN7Q53RD9 439 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 TPTE2P1Q5T6R2 138 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 Q6ZS46 218 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 LINC00596Q86U02 117 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 FAM110DQ8TAY7 271 aaPredicted RBP14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 IFT22Q9H7X7 185 aa14.28□□□□□ -0.12
CTDNEP1-207ENST00000572043 A0A087X0M5 115 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 A0A1B0GX30 115 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 A0A1W2PPE3 182 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 CRTAPO75718 401 aaPredicted RBP14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 BRS3P32247 399 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 VHLP40337 213 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 TMEM95Q3KNT9 176 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 OR9G1Q8NH87 305 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 FAM46BQ96A09 425 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 SELENOIQ9C0D9 397 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 CCDC90BQ9GZT6 254 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 MMP28Q9H239 520 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 NCOR1P1Q9H4R4 102 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 LSM2Q9Y333 95 aaKnown RBP14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 TPRKBQ9Y3C4 175 aa14.27□□□□□ -0.13
CTDNEP1-207ENST00000572043 FAM90A22PA8MWA6 464 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 HSMCR30P0CW71 290 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 MYF6P23409 242 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 CEACAM3P40198 252 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 ARHGDIBP52566 201 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 RNLSQ5VYX0 342 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 IZUMO2Q6UXV1 221 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 LYG1Q8N1E2 194 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 TMEM104Q8NE00 496 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 TMEM203Q969S6 136 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 RPEQ96AT9 228 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 CYYR1Q96J86 154 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 PRSS22Q9GZN4 317 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 MMP27Q9H306 513 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 SERTAD4Q9NUC0 356 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 PSG11Q9UQ72 335 aa14.26□□□□□ -0.13
CTDNEP1-207ENST00000572043 SH2D7A6NKC9 451 aaPredicted RBP14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 MCRIP1C9JLW8 97 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 NPIPB11E5RHQ5 1161 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 H0YHG0 523 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 LY6LH3BQJ8 138 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 J3QR06 171 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 AIPO00170 330 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 PEX14O75381 377 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 MGMTP16455 207 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 GP2P55259 537 aaKnown RBP14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 SLC35A2P78381 396 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 C2orf68Q2NKX9 166 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 RBM48Q5RL73 367 aaKnown RBP14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 LIPKQ5VXJ0 399 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 RAB12Q6IQ22 244 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 FAM53AQ6NSI3 398 aaPredicted RBP14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 C11orf88Q6PI97 169 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 CEACAM19Q7Z692 300 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 LYPD6Q86Y78 171 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 NKAIN3Q8N8D7 197 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 CAPSLQ8WWF8 208 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 THRSPQ92748 146 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 UFD1Q92890 307 aa14.25□□□□□ -0.13
CTDNEP1-207ENST00000572043 TOMM40LQ969M1 308 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 187.7 ms