RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SCN3BQ9NY72 215 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 ZNF581Q9P0T4 197 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 FAM172BPA6NC97 362 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 LEUTXA8MZ59 168 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 F2RL2O00254 374 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 TOR1AO14656 332 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 MAPK3P27361 379 aaPredicted RBP16.32■□□□□ 0.2
CLK3-225ENST00000569063 HLA-DRB5Q30154 266 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 SLC22A6Q4U2R8 563 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 TMEM219Q86XT9 240 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 LYPD6Q86Y78 171 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 JAGN1Q8N5M9 183 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 CALYQ9NYX4 217 aa16.32■□□□□ 0.2
CLK3-225ENST00000569063 MRPS28Q9Y2Q9 187 aaKnown RBP16.32■□□□□ 0.2
CLK3-225ENST00000569063 A0A1W2PP11 408 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 NPIPB11E5RHQ5 1161 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 BUB1B-PAK6H3BSN5 160 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 IL1AP01583 271 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 MAS1P04201 325 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 NFYBP25208 207 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 CEACAM3P40198 252 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 SLC35A2P78381 396 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 SPHARQ15513 63 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 UTF1Q5T230 341 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 GLIPR1L1Q6UWM5 242 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 MS4A15Q8N5U1 240 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 OR10A7Q8NGE5 316 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 MUL1Q969V5 352 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 MRPS24Q96EL2 167 aaKnown RBP16.31■□□□□ 0.2
CLK3-225ENST00000569063 ZNF702PQ9H963 129 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 IDI2-AS1Q9NZ38 188 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 LSM2Q9Y333 95 aaKnown RBP16.31■□□□□ 0.2
CLK3-225ENST00000569063 KIAA2026Q5HYC2 2103 aa16.31■□□□□ 0.2
CLK3-225ENST00000569063 LY6LH3BQJ8 138 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 H3BUI4 141 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 MYF6P23409 242 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 HERPUD1Q15011 391 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 UNQ9370/PRO34162Q6UXP9 181 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 NKAIN3Q8N8D7 197 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 OR9G1Q8NH87 305 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 MRGPRDQ8TDS7 321 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 OR5M11Q96RB7 305 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 ANKRD60Q9BZ19 345 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 MMP27Q9H306 513 aa16.3■□□□□ 0.2
CLK3-225ENST00000569063 H0YHG0 523 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 GZMHP20718 246 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 BRS3P32247 399 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 ARHGDIBP52566 201 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 IRF3Q14653 427 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 ACSM3Q53FZ2 586 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 ATAD3CQ5T2N8 411 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 TPTE2P1Q5T6R2 138 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 SLC16A12Q6ZSM3 486 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 CFHR4Q92496 578 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 SGCDQ92629 289 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 UQCC2Q9BRT2 126 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 PRSS22Q9GZN4 317 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 MMP28Q9H239 520 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 VCX3BQ9H321 246 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 DUSP21Q9H596 190 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 SPACA1Q9HBV2 294 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 SERTAD4Q9NUC0 356 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 TPRKBQ9Y3C4 175 aa16.29■□□□□ 0.2
CLK3-225ENST00000569063 MGAM2Q2M2H8 2515 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 TMEM30CPA0ZSE6 113 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 OOSP1A8MZH6 123 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 J3QR06 171 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 GPR50Q13585 617 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 AWAT2Q6E213 333 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 Q6ZTK2 550 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 KLHDC1Q8N7A1 406 aa16.28■□□□□ 0.2
CLK3-225ENST00000569063 RCC2Q9P258 522 aaKnown RBP16.28■□□□□ 0.2
CLK3-225ENST00000569063 TRAV39A0A0B4J263 110 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 SSTR5P35346 364 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 GP2P55259 537 aaKnown RBP16.27■□□□□ 0.2
CLK3-225ENST00000569063 BLCAPP62952 87 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 HABP2Q14520 560 aaPredicted RBP16.27■□□□□ 0.2
CLK3-225ENST00000569063 INSL4Q14641 139 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 MED22Q15528 200 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 CCDC144NLQ6NUI1 221 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 ZNF497Q6ZNH5 498 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 C16orf82Q7Z2V1 217 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 RFESDQ8TAC1 157 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 GHRLQ9UBU3 117 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 PSG11Q9UQ72 335 aa16.27■□□□□ 0.2
CLK3-225ENST00000569063 AMMECR1Q9Y4X0 333 aaPredicted RBP16.27■□□□□ 0.2
CLK3-225ENST00000569063 FAM90A10PA6NDY2 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A18PA6NE21 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A16PA6NEW6 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 ERICH4A6NGS2 130 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A20PA6NIJ5 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A7PA6NKC0 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A12PA8MX19 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A5PA8MXJ8 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A23PA8MXZ1 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 SC5DO75845 299 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 MT-ND4P03905 459 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A15PP0C7V4 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A13PP0C7W8 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A14PP0C7W9 464 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms