RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 LINC00574Q9H8X3 128 aa14.77□□□□□ -0.05
CLN3-237ENST00000569030 PAK1IP1Q9NWT1 392 aaPredicted RBP14.77□□□□□ -0.05
CLN3-237ENST00000569030 CALYQ9NYX4 217 aa14.77□□□□□ -0.05
CLN3-237ENST00000569030 LY6LH3BQJ8 138 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 M0QZ24 198 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 F2RL2O00254 374 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 MAS1P04201 325 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 CD24P25063 80 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 FBLN7Q53RD9 439 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 Q6ZS46 218 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 LYPD6Q86Y78 171 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 JAGN1Q8N5M9 183 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 RFESDQ8TAC1 157 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 ZNF596Q8TC21 504 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 MRGPRDQ8TDS7 321 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 LEAP2Q969E1 77 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 OR5M11Q96RB7 305 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 PITPNC1Q9UKF7 332 aa14.76□□□□□ -0.05
CLN3-237ENST00000569030 MRPS28Q9Y2Q9 187 aaKnown RBP14.76□□□□□ -0.05
CLN3-237ENST00000569030 LSM2Q9Y333 95 aaKnown RBP14.76□□□□□ -0.05
CLN3-237ENST00000569030 LEUTXA8MZ59 168 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 NPIPB11E5RHQ5 1161 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 BUB1B-PAK6H3BSN5 160 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 TOR1AO14656 332 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 ZNF780AO75290 641 aaPredicted RBP14.75□□□□□ -0.05
CLN3-237ENST00000569030 IGHV3-7P01780 117 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 GTF2F2P13984 249 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 KCNJ3P48549 501 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 PRRX1P54821 245 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 GP2P55259 537 aaKnown RBP14.75□□□□□ -0.05
CLN3-237ENST00000569030 BLCAPP62952 87 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 HLA-DRB5Q30154 266 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 GLIPR1L1Q6UWM5 242 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 Q8N2B8 174 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 KLHDC1Q8N7A1 406 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 MND1Q9BWT6 205 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 SERTAD4Q9NUC0 356 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 IDI2-AS1Q9NZ38 188 aa14.75□□□□□ -0.05
CLN3-237ENST00000569030 ERICH4A6NGS2 130 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 TSPAN15O95858 294 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 IL1AP01583 271 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 SSTR5P35346 364 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 SLC35A2P78381 396 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 GABPB1Q06547 395 aaPredicted RBP14.74□□□□□ -0.05
CLN3-237ENST00000569030 GPR176Q14439 515 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 RBM39Q14498 530 aaKnown RBP14.74□□□□□ -0.05
CLN3-237ENST00000569030 IRF3Q14653 427 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 HERPUD1Q15011 391 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 LTC4SQ16873 150 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 MPV17LQ2QL34 196 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 ATAD3CQ5T2N8 411 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 TPTE2P1Q5T6R2 138 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 FAM27D1Q5T7N8 215 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 C11orf88Q6PI97 169 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 UNQ9370/PRO34162Q6UXP9 181 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 LINC00596Q86U02 117 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 CDH26Q8IXH8 852 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 C11orf44Q8N8P7 122 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 MYDGFQ969H8 173 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 PCDHB16Q9NRJ7 776 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 SCN3BQ9NY72 215 aa14.74□□□□□ -0.05
CLN3-237ENST00000569030 VSIG10L2P0DP72 767 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 MYF6P23409 242 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 SPHARQ15513 63 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 ACSM3Q53FZ2 586 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 OR9G1Q8NH87 305 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 CFHR4Q92496 578 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 CYYR1Q96J86 154 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 TMED9Q9BVK6 235 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 MMP28Q9H239 520 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 BANF2Q9H503 90 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 PSG11Q9UQ72 335 aa14.73□□□□□ -0.05
CLN3-237ENST00000569030 TMEM30CPA0ZSE6 113 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 J3QR06 171 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 CEACAM3P40198 252 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 VHLP40337 213 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 AWAT2Q6E213 333 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 Q6ZTK2 550 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 TMEM104Q8NE00 496 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 CCDC107Q8WV48 283 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 CREB3L1Q96BA8 519 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 PRSS22Q9GZN4 317 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 MMP27Q9H306 513 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 DUSP21Q9H596 190 aa14.72□□□□□ -0.05
CLN3-237ENST00000569030 RCC2Q9P258 522 aaKnown RBP14.72□□□□□ -0.05
CLN3-237ENST00000569030 MT-ND4P03905 459 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 MAPK3P27361 379 aaPredicted RBP14.71□□□□□ -0.05
CLN3-237ENST00000569030 BRS3P32247 399 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 DIAPH2-AS1Q14236 149 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 MED22Q15528 200 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 ZNF497Q6ZNH5 498 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 MS4A15Q8N5U1 240 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 DTX3Q8N9I9 347 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 UBALD1Q8TB05 177 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 MRPS24Q96EL2 167 aaKnown RBP14.71□□□□□ -0.05
CLN3-237ENST00000569030 ANKRD60Q9BZ19 345 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 TPRKBQ9Y3C4 175 aa14.71□□□□□ -0.05
CLN3-237ENST00000569030 TGP01266 2768 aa14.71□□□□□ -0.06
CLN3-237ENST00000569030 H0YHG0 523 aa14.7□□□□□ -0.06
CLN3-237ENST00000569030 C15orf65H3BRN8 121 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms