RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	RSBN1	Q5VWQ0	802 aa	Predicted RBP	13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	ASCL4	Q6XD76	172 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	C10orf67	Q8IYJ2	551 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	CBR4	Q8N4T8	237 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	DRAM1	Q8N682	238 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	C5orf56	Q8N8D9	126 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	LINC00482	Q8N8I6	264 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	RHOXF1	Q8NHV9	184 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	TNFAIP8L1	Q8WVP5	186 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	PDCD1LG2	Q9BQ51	273 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	ZNF649	Q9BS31	505 aa		13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	MCRIP2	Q9BUT9	160 aa	Known RBP	13.36	□□□□□ -0.27
CLN3-231	ENST00000568422	MRPS18A	Q9NVS2	196 aa	Known RBP	13.36	□□□□□ -0.27
CLN3-231	ENST00000568422		A0A1W2PPI3	338 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422		E9PI62	339 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	GABRP	O00591	440 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	CD2	P06729	351 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	GZMH	P20718	246 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	HES1	Q14469	280 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	ZSCAN26	Q16670	478 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	KLHL22	Q53GT1	634 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	SATL1	Q86VE3	508 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	COMMD1	Q8N668	190 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	OR10X1	Q8NGY0	326 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	IFT22	Q9H7X7	185 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	AASS	Q9UDR5	926 aa		13.35	□□□□□ -0.27
CLN3-231	ENST00000568422	RPL36	Q9Y3U8	105 aa	Known RBP	13.35	□□□□□ -0.27
CLN3-231	ENST00000568422		H3BNX3	289 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	KRTAP10-11	P60412	298 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	RPL23A	P62750	156 aa	Known RBP	13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	SLC35B1	P78383	322 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	CCDC58	Q4VC31	144 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	NHLRC3	Q5JS37	347 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	LPCAT4	Q643R3	524 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	ZNF329	Q86UD4	541 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	MRPL41	Q8IXM3	137 aa	Known RBP	13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	MRGPRD	Q8TDS7	321 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	GPR148	Q8TDV2	347 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	LEAP2	Q969E1	77 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	DPCD	Q9BVM2	203 aa	Predicted RBP	13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	JAM3	Q9BX67	310 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	FAM192A	Q9GZU8	254 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	FAM118A	Q9NWS6	357 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	IL36G	Q9NZH8	169 aa		13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	ZMAT5	Q9UDW3	170 aa	Known RBP	13.34	□□□□□ -0.27
CLN3-231	ENST00000568422	SERPINE3	A8MV23	424 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	HTR3B	O95264	441 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	IGHV3-7	P01780	117 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	IGHG2	P01859	326 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	SSTR5	P35346	364 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	THBS3	P49746	956 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	ZNF816	Q0VGE8	651 aa	Predicted RBP	13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	DCTN2	Q13561	401 aa	Known RBP	13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	PIGY	Q3MUY2	71 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	DEFB121	Q5J5C9	76 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	RPL22L1	Q6P5R6	122 aa	Known RBP	13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	OR2W3	Q7Z3T1	314 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	LINC00596	Q86U02	117 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	FOXRED2	Q8IWF2	684 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	SUMF2	Q8NBJ7	301 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	OR51A2	Q8NGJ7	313 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	OR52M1	Q8NGK5	317 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	OR52I1	Q8NGK6	324 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	RFESD	Q8TAC1	157 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	PLPPR1	Q8TBJ4	325 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	C9orf16	Q9BUW7	83 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	METTL9	Q9H1A3	318 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	AMBN	Q9NP70	447 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	ST3GAL6	Q9Y274	331 aa		13.33	□□□□□ -0.28
CLN3-231	ENST00000568422	LOC100130705	A0A1B0GUX0	176 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	IGKV1D-33	P01593	117 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	IGKV1-33	P01594	117 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	CSTB	P04080	98 aa	Known RBP	13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	GAPDH	P04406	335 aa	Known RBP	13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	MYCNOS	P40205	109 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	GNG10	P50151	68 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	EBI3	Q14213	229 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	DIAPH2-AS1	Q14236	149 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	HNF4G	Q14541	408 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	LTC4S	Q16873	150 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	ETV3L	Q6ZN32	361 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	SLC35E3	Q7Z769	313 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	C8orf31	Q8N9H6	132 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	OR52N1	Q8NH53	320 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	NOL4L	Q96MY1	436 aa	Predicted RBP	13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	S100A13	Q99584	98 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	GON7	Q9BXV9	100 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	TMEM138	Q9NPI0	162 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	TAS2R4	Q9NYW5	299 aa		13.32	□□□□□ -0.28
CLN3-231	ENST00000568422	TMEM30CP	A0ZSE6	113 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	CCRL2	O00421	344 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	HSD17B6	O14756	317 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	ZNF780A	O75290	641 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	OR7C1	O76099	320 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	SOX2	P48431	317 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	GTF2A1	P52655	376 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	RBM11	P57052	281 aa	Known RBP	13.31	□□□□□ -0.28

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