RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PCDHB10Q9UN67 800 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 GPR31O00270 319 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 OR2H2O95918 312 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 FAM157CP0CG43 387 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 PGA5P0DJD9 388 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 HOXC12P31275 282 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 IGFL3Q6UXB1 125 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 ZNF565Q8N9K5 539 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 CCL28Q9NRJ3 127 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 TAS2R3Q9NYW6 316 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 POLDIP2Q9Y2S7 368 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 CECR9P0C854 216 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 HLA-DRB3P79483 266 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 GALNT11Q8NCW6 608 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 PLPPR1Q8TBJ4 325 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 ZC4H2Q9NQZ6 224 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 FBXO9Q9UK97 447 aaPredicted RBP17.19■□□□□ 0.34
CLN3-230ENST00000568076 TMED3Q9Y3Q3 217 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 LAMA5O15230 3695 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 DSPP15924 2871 aaKnown RBP17.19■□□□□ 0.34
CLN3-230ENST00000568076 SIRPB1O00241 398 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 SLC33A1O00400 549 aaPredicted RBP17.19■□□□□ 0.34
CLN3-230ENST00000568076 HSD17B6O14756 317 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 TAAR5O14804 337 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 MLNRO43193 412 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 OR8G1Q15617 311 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 Q8IYB0 196 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 BOLLQ8N9W6 283 aaKnown RBP17.19■□□□□ 0.34
CLN3-230ENST00000568076 SUN5Q8TC36 379 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 ZNF71Q9NQZ8 489 aaPredicted RBP17.19■□□□□ 0.34
CLN3-230ENST00000568076 ASF1BQ9NVP2 202 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 COQ3Q9NZJ6 369 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 FBXL17Q9UF56 701 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 TINAGQ9UJW2 476 aa17.19■□□□□ 0.34
CLN3-230ENST00000568076 BOD1L1Q8NFC6 3051 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 TRAV39A0A0B4J263 110 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 GRPP07492 148 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 NBL1P41271 181 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 ZNF324BQ6AW86 544 aaPredicted RBP17.18■□□□□ 0.34
CLN3-230ENST00000568076 SPERTQ8NA61 448 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 OR4D5Q8NGN0 318 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 OR4A4PQ8NGN8 299 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 RNF141Q8WVD5 230 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 TMEM56Q96MV1 263 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 CABLES2Q9BTV7 478 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 ZDHHC8Q9ULC8 765 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 TMEM56-RWDD3S4R434 201 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 ZFHX2Q9C0A1 2572 aaPredicted RBP17.18■□□□□ 0.34
CLN3-230ENST00000568076 AKAP13Q12802 2813 aa17.18■□□□□ 0.34
CLN3-230ENST00000568076 E5RGE8 158 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 TMEM33P57088 247 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 ZNF146Q15072 292 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 LILRB1Q8NHL6 650 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 ERGIC1Q969X5 290 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 BSCL2Q96G97 398 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 KIRREL1Q96J84 757 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 PURGQ9UJV8 347 aaKnown RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 PROCRQ9UNN8 238 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 NSG2Q9Y328 171 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 PRR14LQ5THK1 2151 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 NKX2-6A6NCS4 301 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 MBD3L4A6NDZ8 208 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 MBD3L3A6NE82 208 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 MBD3L5A6NJ08 208 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 IGLV1-44P01699 117 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 SRPXP78539 464 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 CLEC9AQ6UXN8 241 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 H1FOOQ8IZA3 346 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 SELENOHQ8IZQ5 122 aaKnown RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 OR8G5Q8NG78 346 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 MBD3L2Q8NHZ7 208 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 MS4A7Q9GZW8 240 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 PLEKHA2Q9HB19 425 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 OBP2BQ9NPH6 170 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 TREM2Q9NZC2 230 aa17.17■□□□□ 0.34
CLN3-230ENST00000568076 UBE2J1Q9Y385 318 aaPredicted RBP17.17■□□□□ 0.34
CLN3-230ENST00000568076 RIF1Q5UIP0 2472 aaKnown RBP17.16■□□□□ 0.34
CLN3-230ENST00000568076 K7EM74 188 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 NXPH2O95156 264 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 HOXD4P09016 255 aaPredicted RBP17.16■□□□□ 0.34
CLN3-230ENST00000568076 M6PRP20645 277 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 HOXA4Q00056 320 aaPredicted RBP17.16■□□□□ 0.34
CLN3-230ENST00000568076 ZNF497Q6ZNH5 498 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 Q6ZS92 163 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 C11orf53Q8IXP5 236 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 OR10J5Q8NHC4 309 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 MARC2Q969Z3 335 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 SMIM3Q9BZL3 60 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 TAF9BQ9HBM6 251 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 OR1A1Q9P1Q5 309 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 FZR1Q9UM11 496 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 OR2W1Q9Y3N9 320 aa17.16■□□□□ 0.34
CLN3-230ENST00000568076 IGHV1-18A0A0C4DH31 117 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 TMEM210A6NLX4 147 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 SIGLEC5O15389 551 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 TNFSF12O43508 249 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 CDS2O95674 445 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 MDH2P40926 338 aaKnown RBP17.15■□□□□ 0.34
CLN3-230ENST00000568076 DMBX1Q8NFW5 382 aa17.15■□□□□ 0.34
CLN3-230ENST00000568076 PIGMQ9H3S5 423 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms