RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 RGP1Q92546 391 aaPredicted RBP12.78□□□□□ -0.36
CLN3-229ENST00000567963 LEAP2Q969E1 77 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 TOMM40LQ969M1 308 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 JAM3Q9BX67 310 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 PSG11Q9UQ72 335 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 SNRNP70P08621 437 aaKnown RBP12.77□□□□□ -0.37
CLN3-229ENST00000567963 LIMS3P0CW19 117 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 LIMS4P0CW20 117 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 SOX2P48431 317 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 KCNJ3P48549 501 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 SLC35A2P78381 396 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 CCDC58Q4VC31 144 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 OSR2Q8N2R0 312 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 RFESDQ8TAC1 157 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 PLPPR1Q8TBJ4 325 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 MRGPRDQ8TDS7 321 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 FAM192AQ9GZU8 254 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 TAS2R4Q9NYW5 299 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 MOB4Q9Y3A3 225 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 HSPE1-MOB4S4R3N1 261 aa12.77□□□□□ -0.37
CLN3-229ENST00000567963 A0A1W2PPI3 338 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 HTR3BO95264 441 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 MADCAM1Q13477 382 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 DIAPH2-AS1Q14236 149 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 XAF1Q6GPH4 301 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 RPL22L1Q6P5R6 122 aaKnown RBP12.76□□□□□ -0.37
CLN3-229ENST00000567963 SLC16A12Q6ZSM3 486 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 OR10A7Q8NGE5 316 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 OR56B4Q8NH76 319 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 GPR148Q8TDV2 347 aa12.76□□□□□ -0.37
CLN3-229ENST00000567963 FGF20Q9NP95 211 aaPredicted RBP12.76□□□□□ -0.37
CLN3-229ENST00000567963 CDRT1O95170 752 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 CD2P06729 351 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 SSTR5P35346 364 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 RAB7AP51149 207 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 SMN1Q16637 294 aaKnown RBP12.75□□□□□ -0.37
CLN3-229ENST00000567963 LTC4SQ16873 150 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 KHDC1LQ5JSQ8 128 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 DRAM1Q8N682 238 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 SUMF2Q8NBJ7 301 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 TMEM106AQ96A25 262 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 RCC1LQ96I51 464 aaKnown RBP12.75□□□□□ -0.37
CLN3-229ENST00000567963 DPCDQ9BVM2 203 aaPredicted RBP12.75□□□□□ -0.37
CLN3-229ENST00000567963 IFT22Q9H7X7 185 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 S100A14Q9HCY8 104 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 ZNF581Q9P0T4 197 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 ST3GAL6Q9Y274 331 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 ZNF281Q9Y2X9 895 aa12.75□□□□□ -0.37
CLN3-229ENST00000567963 TRAV39A0A0B4J263 110 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 PSMB11A5LHX3 300 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 WBP4O75554 376 aaKnown RBP12.74□□□□□ -0.37
CLN3-229ENST00000567963 DUS4LO95620 317 aaKnown RBP12.74□□□□□ -0.37
CLN3-229ENST00000567963 MPIG6BO95866 241 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 GNG10P50151 68 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 ETV1P50549 477 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 HES1Q14469 280 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 NHLRC3Q5JS37 347 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 OR8H3Q8N146 312 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 C5orf56Q8N8D9 126 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 METTL9Q9H1A3 318 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 TMEM138Q9NPI0 162 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 IL36GQ9NZH8 169 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 ING4Q9UNL4 249 aa12.74□□□□□ -0.37
CLN3-229ENST00000567963 CLIC3O95833 236 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 TMEM11P17152 192 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 GZMHP20718 246 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 DCKP27707 260 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 ZNF93P35789 620 aaPredicted RBP12.73□□□□□ -0.37
CLN3-229ENST00000567963 OR2G6Q5TZ20 316 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 ZNF329Q86UD4 541 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 PQLC1Q8N2U9 271 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 OR10X1Q8NGY0 326 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 OR52N1Q8NH53 320 aa12.73□□□□□ -0.37
CLN3-229ENST00000567963 SIRT4Q9Y6E7 314 aaPredicted RBP12.73□□□□□ -0.37
CLN3-229ENST00000567963 A0A1W2PPE3 182 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 ANKRD65E5RJM6 399 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 GEMIN2O14893 280 aaKnown RBP12.72□□□□□ -0.37
CLN3-229ENST00000567963 FGF16O43320 207 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 OR7C1O76099 320 aaPredicted RBP12.72□□□□□ -0.37
CLN3-229ENST00000567963 CSTBP04080 98 aaKnown RBP12.72□□□□□ -0.37
CLN3-229ENST00000567963 RBM11P57052 281 aaKnown RBP12.72□□□□□ -0.37
CLN3-229ENST00000567963 PPP3R1P63098 170 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 HNF4GQ14541 408 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 TMPRSS11AQ6ZMR5 421 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 CHPT1Q8WUD6 406 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 NOL4LQ96MY1 436 aaPredicted RBP12.72□□□□□ -0.37
CLN3-229ENST00000567963 S100A13Q99584 98 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 BABAM2Q9NXR7 383 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 K7EIL1 84 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 OGG1O15527 345 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 IGKV1D-33P01593 117 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 IGKV1-33P01594 117 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 BDKRB2P30411 391 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 KRTAP10-11P60412 298 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 ZNF816Q0VGE8 651 aaPredicted RBP12.72□□□□□ -0.37
CLN3-229ENST00000567963 EBI3Q14213 229 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 DDI2Q5TDH0 399 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 LINC00596Q86U02 117 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 LINC00482Q8N8I6 264 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 ZNF555Q8NEP9 628 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms