RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 OR51D1Q8NGF3 324 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 OR52I1Q8NGK6 324 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 OR5D14Q8NGL3 314 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 LEAP2Q969E1 77 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 ALG8Q9BVK2 526 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 GPR61Q9BZJ8 451 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 DCLRE1BQ9H816 532 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 LINC00574Q9H8X3 128 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 ISG20L2Q9H9L3 353 aaKnown RBP11.82□□□□□ -0.52
CLN3-228ENST00000567804 C8orf4Q9NR00 106 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 IDI2-AS1Q9NZ38 188 aa11.82□□□□□ -0.52
CLN3-228ENST00000567804 SNTNA6NMZ2 147 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 NPIPB11E5RHQ5 1161 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 FGF16O43320 207 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 IGHV3-7P01780 117 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 TMEM11P17152 192 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 C21orf33P30042 268 aaPredicted RBP11.81□□□□□ -0.52
CLN3-228ENST00000567804 THBS3P49746 956 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 PAX5Q02548 391 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 MADCAM1Q13477 382 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 DIAPH2-AS1Q14236 149 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 GALEQ14376 348 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 IL13RA2Q14627 380 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 SYS1Q8N2H4 156 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 DHRSXQ8N5I4 330 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 DRAM1Q8N682 238 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 PXT1Q8NFP0 134 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 CHPT1Q8WUD6 406 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 DPF1Q92782 380 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 MRPL48Q96GC5 212 aaKnown RBP11.81□□□□□ -0.52
CLN3-228ENST00000567804 NR1H4Q96RI1 486 aaPredicted RBP11.81□□□□□ -0.52
CLN3-228ENST00000567804 MRPS18AQ9NVS2 196 aaKnown RBP11.81□□□□□ -0.52
CLN3-228ENST00000567804 PSG11Q9UQ72 335 aa11.81□□□□□ -0.52
CLN3-228ENST00000567804 TMEM212A6NML5 194 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 GABRPO00591 440 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 ZFPL1O95159 310 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 RPSAP08865 295 aaKnown RBP11.8□□□□□ -0.52
CLN3-228ENST00000567804 CAPGP40121 348 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 RAB7AP51149 207 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 RAB40BQ12829 278 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 HES1Q14469 280 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 LTC4SQ16873 150 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 RSBN1Q5VWQ0 802 aaPredicted RBP11.8□□□□□ -0.52
CLN3-228ENST00000567804 TTC23Q5W5X9 447 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 LAIR2Q6ISS4 152 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 C18orf65Q6ZTR6 163 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 C8orf86Q6ZUL3 223 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 OR2W3Q7Z3T1 314 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 OR8H3Q8N146 312 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 PLPPR1Q8TBJ4 325 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 HAVCR2Q8TDQ0 301 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 TSEN15Q8WW01 171 aaKnown RBP11.8□□□□□ -0.52
CLN3-228ENST00000567804 NOL4LQ96MY1 436 aaPredicted RBP11.8□□□□□ -0.52
CLN3-228ENST00000567804 MYCBPQ99417 103 aaPredicted RBP11.8□□□□□ -0.52
CLN3-228ENST00000567804 BARHL1Q9BZE3 327 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.8□□□□□ -0.52
CLN3-228ENST00000567804 ERVK13-1Q9NX77 482 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 DHDHQ9UQ10 334 aa11.8□□□□□ -0.52
CLN3-228ENST00000567804 RPL36Q9Y3U8 105 aaKnown RBP11.8□□□□□ -0.52
CLN3-228ENST00000567804 SERPINE3A8MV23 424 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 E9PI62 339 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 FADS2O95864 444 aaKnown RBP11.79□□□□□ -0.52
CLN3-228ENST00000567804 LIMS3P0CW19 117 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 LIMS4P0CW20 117 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 SLC6A1P30531 599 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 KCNJ3P48549 501 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 GNG10P50151 68 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 ZNF529Q6P280 563 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 Q8NFD4 153 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 OR10A7Q8NGE5 316 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 OR51A2Q8NGJ7 313 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 OR5AK2Q8NH90 309 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 RFESDQ8TAC1 157 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 MRGPRDQ8TDS7 321 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 TNFAIP8L1Q8WVP5 186 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 CPNE2Q96FN4 548 aaPredicted RBP11.79□□□□□ -0.52
CLN3-228ENST00000567804 GPER1Q99527 375 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 PDCD1LG2Q9BQ51 273 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 MCRIP2Q9BUT9 160 aaKnown RBP11.79□□□□□ -0.52
CLN3-228ENST00000567804 FGF20Q9NP95 211 aaPredicted RBP11.79□□□□□ -0.52
CLN3-228ENST00000567804 ZFP57Q9NU63 452 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 LINC00527Q9UJ94 153 aa11.79□□□□□ -0.52
CLN3-228ENST00000567804 TENM3Q9P273 2699 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 NUDT19A8MXV4 375 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 IGKV1D-33P01593 117 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 IGKV1-33P01594 117 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 IGHG2P01859 326 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 CCDC159P0C7I6 412 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 RAB3AP20336 220 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 SSTR5P35346 364 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 ETV1P50549 477 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 CD69Q07108 199 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 MRPL28Q13084 256 aaKnown RBP11.78□□□□□ -0.52
CLN3-228ENST00000567804 HNF4GQ14541 408 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 PIGYQ3MUY2 71 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 SLC16A12Q6ZSM3 486 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 SLC35E3Q7Z769 313 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 COMMD1Q8N668 190 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 OR10K1Q8NGX5 313 aa11.78□□□□□ -0.52
CLN3-228ENST00000567804 P2RX4Q99571 388 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms