RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 HIST1H1DP16402 221 aaKnown RBP11.1□□□□□ -0.63
CLK3-218ENST00000566926 GABRA2P47869 451 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 VEGFCP49767 419 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 RBM11P57052 281 aaKnown RBP11.1□□□□□ -0.63
CLK3-218ENST00000566926 HILS1P60008 231 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 ACTBP60709 375 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 ACTG1P63261 375 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 IKZF1Q13422 519 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 SPIN3Q5JUX0 258 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 STEAP3Q658P3 488 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 ACP7Q6ZNF0 438 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 SNX29P2Q8IUI4 249 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 LYSMD2Q8IV50 215 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 FAM216BQ8N7L0 139 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 CHST4Q8NCG5 386 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 SEH1LQ96EE3 360 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 NRIP2Q9BQI9 281 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 C7orf50Q9BRJ6 194 aaKnown RBP11.1□□□□□ -0.63
CLK3-218ENST00000566926 BANF2Q9H503 90 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 IFT22Q9H7X7 185 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 GLS2Q9UI32 602 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 RPUSD1Q9UJJ7 312 aaKnown RBP11.1□□□□□ -0.63
CLK3-218ENST00000566926 ST3GAL6Q9Y274 331 aa11.1□□□□□ -0.63
CLK3-218ENST00000566926 RBMX2Q9Y388 322 aaKnown RBP11.1□□□□□ -0.63
CLK3-218ENST00000566926 SYNGR1O43759 233 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 NXPH2O95156 264 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 PTTG1O95997 202 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 GLAP06280 429 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 SFTPBP07988 381 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 PSG2P11465 335 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 CBX5P45973 191 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 PLA2G7Q13093 441 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 PDCD1Q15116 288 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 BAK1Q16611 211 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 KRTAP24-1Q3LI83 254 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 KLF17Q5JT82 389 aaPredicted RBP11.09□□□□□ -0.63
CLK3-218ENST00000566926 GPR157Q5UAW9 335 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 Q6ZTK2 550 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 FAM58AQ8N1B3 248 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 OR10K1Q8NGX5 313 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 TRIM63Q969Q1 353 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 SLAMF9Q96A28 289 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 GAFA1Q96PS6 74 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 NEDD4LQ96PU5 975 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 SLC6A7Q99884 636 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 PCGF1Q9BSM1 259 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 MTCH1Q9NZJ7 389 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 SLC25A10Q9UBX3 287 aaPredicted RBP11.09□□□□□ -0.63
CLK3-218ENST00000566926 KPTNQ9Y664 436 aa11.09□□□□□ -0.63
CLK3-218ENST00000566926 DSCAML1Q8TD84 2053 aa11.08□□□□□ -0.63
CLK3-218ENST00000566926 TRAV40A0A0B4J280 105 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 A0A1W2PP11 408 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 A0A1W2PQ09 198 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 POM121CA8CG34 1229 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 CENPXA8MT69 81 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 FOXI3A8MTJ6 420 aaPredicted RBP11.08□□□□□ -0.64
CLK3-218ENST00000566926 MFNGO00587 321 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 RBBP9O75884 186 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 VENTXO95231 258 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 NDUFB7P17568 137 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 AMY2BP19961 511 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 BCL3P20749 454 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 BLVRBP30043 206 aaPredicted RBP11.08□□□□□ -0.64
CLK3-218ENST00000566926 ERVK11-1P61568 191 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 ASAH1Q13510 395 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 ZNF260Q3ZCT1 412 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 CDNFQ49AH0 187 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 MZT2BQ6NZ67 158 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 C9orf139Q6ZV77 190 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 IZUMO1Q8IYV9 350 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 ZNF561Q8N587 486 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 GPX8Q8TED1 209 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 C22orf15Q8WYQ4 148 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 H1FXQ92522 213 aaKnown RBP11.08□□□□□ -0.64
CLK3-218ENST00000566926 EMG1Q92979 244 aaKnown RBP11.08□□□□□ -0.64
CLK3-218ENST00000566926 SDSLQ96GA7 329 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 DCTN5Q9BTE1 182 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 C19orf24Q9BVV8 132 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 SEBOXQ9HB31 216 aaPredicted RBP11.08□□□□□ -0.64
CLK3-218ENST00000566926 HES4Q9HCC6 221 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 PLEKHJ1Q9NW61 149 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 ZNF69Q9UC07 566 aa11.08□□□□□ -0.64
CLK3-218ENST00000566926 IGKV1D-17A0A075B6S4 117 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 A0A0A6YYD4 124 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 A0A1B0GW55 424 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 RFPL4AA6NLU0 287 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 RFPL4AL1F8VTS6 287 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 PDCD6O75340 191 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 CSF1P09603 554 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 DUX4L2P0CJ85 424 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 DUX4L3P0CJ86 424 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 DUX4L4P0CJ87 422 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 DUX4L5P0CJ88 424 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 DUX4L6P0CJ89 424 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 DUX4L7P0CJ90 424 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 IGHV4-38-2P0DP08 117 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 TBPP20226 339 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 FUT3P21217 361 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 PRDX2P32119 198 aa11.07□□□□□ -0.64
CLK3-218ENST00000566926 FAUP35544 74 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms