RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 ZNF555Q8NEP9 628 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 OR51D1Q8NGF3 324 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 OR52I1Q8NGK6 324 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 MYDGFQ969H8 173 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 RDH12Q96NR8 316 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM192AQ9GZU8 254 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 METTL9Q9H1A3 318 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 PPIL3Q9H2H8 161 aaKnown RBP11.88□□□□□ -0.51
CLN3-222ENST00000566083 IFT22Q9H7X7 185 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 TMEM138Q9NPI0 162 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM118AQ9NWS6 357 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 IL36GQ9NZH8 169 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 TRAV24A0A0B4J272 114 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 GABRPO00591 440 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 HSPB6O14558 160 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 FGF16O43320 207 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 PRB2P02812 416 aaPredicted RBP11.87□□□□□ -0.51
CLN3-222ENST00000566083 MED21Q13503 144 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 RNF144BQ7Z419 303 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 COMMD1Q8N668 190 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 CHPT1Q8WUD6 406 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 TMEM106AQ96A25 262 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 RAB9BQ9NP90 201 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 FGF20Q9NP95 211 aaPredicted RBP11.87□□□□□ -0.51
CLN3-222ENST00000566083 AASSQ9UDR5 926 aa11.87□□□□□ -0.51
CLN3-222ENST00000566083 PSMB11A5LHX3 300 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 E9PI62 339 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 HTR3BO95264 441 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 AMY1AP04745 511 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 AMY2AP04746 511 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 ZNF93P35789 620 aaPredicted RBP11.86□□□□□ -0.51
CLN3-222ENST00000566083 GPR176Q14439 515 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 ZSCAN26Q16670 478 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 TCTEX1D4Q5JR98 221 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 KHDC1LQ5JSQ8 128 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 C9orf152Q5JTZ5 239 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 RSBN1Q5VWQ0 802 aaPredicted RBP11.86□□□□□ -0.51
CLN3-222ENST00000566083 FOXB2Q5VYV0 432 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 PQLC1Q8N2U9 271 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 OR13A1Q8NGR1 328 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 OR10X1Q8NGY0 326 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 DPCDQ9BVM2 203 aaPredicted RBP11.86□□□□□ -0.51
CLN3-222ENST00000566083 S100A14Q9HCY8 104 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 AURKAIP1Q9NWT8 199 aaPredicted RBP11.86□□□□□ -0.51
CLN3-222ENST00000566083 PSG11Q9UQ72 335 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 ST3GAL6Q9Y274 331 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 SNRNP70P08621 437 aaKnown RBP11.86□□□□□ -0.51
CLN3-222ENST00000566083 LIMS3P0CW19 117 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 LIMS4P0CW20 117 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 MYL12AP19105 171 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 SOX2P48431 317 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 SLC35B1P78383 322 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 HES1Q14469 280 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 MPV17LQ2QL34 196 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 Q3ZCU0 254 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 OR52M1Q8NGK5 317 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 OR52N1Q8NH53 320 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 OR56B4Q8NH76 319 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 MRGPRDQ8TDS7 321 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 DPF1Q92782 380 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 SLC29A1Q99808 456 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 GON7Q9BXV9 100 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 ZFP57Q9NU63 452 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 CHCHD3Q9NX63 227 aaKnown RBP11.86□□□□□ -0.51
CLN3-222ENST00000566083 TAS2R4Q9NYW5 299 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 CKLFQ9UBR5 152 aa11.86□□□□□ -0.51
CLN3-222ENST00000566083 ZMAT5Q9UDW3 170 aaKnown RBP11.86□□□□□ -0.51
CLN3-222ENST00000566083 TMEM30CPA0ZSE6 113 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 OR7C1O76099 320 aaPredicted RBP11.85□□□□□ -0.51
CLN3-222ENST00000566083 GAPDHP04406 335 aaKnown RBP11.85□□□□□ -0.51
CLN3-222ENST00000566083 IGLL1P15814 213 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 TMEM11P17152 192 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 BDKRB2P30411 391 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 GTF2A1P52655 376 aaPredicted RBP11.85□□□□□ -0.51
CLN3-222ENST00000566083 RBM11P57052 281 aaKnown RBP11.85□□□□□ -0.51
CLN3-222ENST00000566083 PIGYQ3MUY2 71 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 DDI2Q5TDH0 399 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 STX19Q8N4C7 294 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 DRAM1Q8N682 238 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 C8orf31Q8N9H6 132 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 SUMF2Q8NBJ7 301 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 OR51A2Q8NGJ7 313 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 SMIM19Q96E16 107 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 MCRIP2Q9BUT9 160 aaKnown RBP11.85□□□□□ -0.51
CLN3-222ENST00000566083 SPACA1Q9HBV2 294 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 C8orf4Q9NR00 106 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 BABAM2Q9NXR7 383 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 SMPD3Q9NY59 655 aaPredicted RBP11.85□□□□□ -0.51
CLN3-222ENST00000566083 ING4Q9UNL4 249 aa11.85□□□□□ -0.51
CLN3-222ENST00000566083 A0A1W2PPI3 338 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 CCRL2O00421 344 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 ORC5O43913 435 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 GTF2F2P13984 249 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 IL3RAP26951 378 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 ZNF816Q0VGE8 651 aaPredicted RBP11.84□□□□□ -0.51
CLN3-222ENST00000566083 RIPK1Q13546 671 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 DCTN2Q13561 401 aaKnown RBP11.84□□□□□ -0.51
CLN3-222ENST00000566083 TMEM30BQ3MIR4 351 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 FOXRED2Q8IWF2 684 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 OR10K1Q8NGX5 313 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms