RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 RBM11P57052 281 aaKnown RBP16.63■□□□□ 0.25
CLN3-219ENST00000565778 RPS11P62280 158 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-219ENST00000565778 LTC4SQ16873 150 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 UTF1Q5T230 341 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 ATAD3CQ5T2N8 411 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 TPTE2P1Q5T6R2 138 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 RSBN1Q5VWQ0 802 aaPredicted RBP16.63■□□□□ 0.25
CLN3-219ENST00000565778 LAIR2Q6ISS4 152 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 Q6ZS46 218 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 AHSA2Q719I0 299 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 OR9G1Q8NH87 305 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 AKR1E2Q96JD6 320 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 PLCXD1Q9NUJ7 323 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 ZNF581Q9P0T4 197 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 TRAV8-7A0A075B6U6 113 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 TRAV39A0A0B4J263 110 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 GEMIN2O14893 280 aaKnown RBP16.62■□□□□ 0.25
CLN3-219ENST00000565778 MYL12BO14950 172 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 FBXO24O75426 580 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 MNDAP41218 407 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 GPR176Q14439 515 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 SLC22A6Q4U2R8 563 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 NHLRC3Q5JS37 347 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 LYG1Q8N1E2 194 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 LEAP2Q969E1 77 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 PGLYRP3Q96LB9 341 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 OR14A2Q96R54 314 aa16.62■□□□□ 0.25
CLN3-219ENST00000565778 LY6LH3BQJ8 138 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 J3QR06 171 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 IL1AP01583 271 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 CD28P10747 220 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 GTF2F2P13984 249 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 CELP19835 753 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 GZMHP20718 246 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 VDAC2P45880 294 aaPredicted RBP16.61■□□□□ 0.25
CLN3-219ENST00000565778 WNT4P56705 351 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 NSUN5P1Q3KNT7 163 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 PDLIM3Q53GG5 364 aaPredicted RBP16.61■□□□□ 0.25
CLN3-219ENST00000565778 CCDC144NLQ6NUI1 221 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 C16orf82Q7Z2V1 217 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 LINC00596Q86U02 117 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 JAGN1Q8N5M9 183 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 MMP28Q9H239 520 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 IFT22Q9H7X7 185 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 LIN7BQ9HAP6 207 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 ERGIC3Q9Y282 383 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 WNK1Q9H4A3 2382 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 TET2Q6N021 2002 aaPredicted RBP16.61■□□□□ 0.25
CLN3-219ENST00000565778 VWFP04275 2813 aa16.61■□□□□ 0.25
CLN3-219ENST00000565778 TRBV5-7A0A0A0MS05 114 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 MAGEA13PA6NCF6 341 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 OOSP1A8MZH6 123 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 NPIPB11E5RHQ5 1161 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 MAS1P04201 325 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 PAX5Q02548 391 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 EMX1Q04741 257 aaPredicted RBP16.6■□□□□ 0.25
CLN3-219ENST00000565778 MPV17LQ2QL34 196 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 NANOGP1Q8N7R0 232 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 NEK7Q8TDX7 302 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 FBLIM1Q8WUP2 373 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 TFAP2CQ92754 450 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 MUL1Q969V5 352 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 RPEQ96AT9 228 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 SLC25A33Q9BSK2 321 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 DCLRE1BQ9H816 532 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 LINC00574Q9H8X3 128 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 PSG11Q9UQ72 335 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 MRPS28Q9Y2Q9 187 aaKnown RBP16.6■□□□□ 0.25
CLN3-219ENST00000565778 AMMECR1Q9Y4X0 333 aaPredicted RBP16.6■□□□□ 0.25
CLN3-219ENST00000565778 CMYA5Q8N3K9 4069 aa16.6■□□□□ 0.25
CLN3-219ENST00000565778 A0A1W2PP11 408 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 FSTP19883 344 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 GNG10P50151 68 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 GLIPR1L1Q6UWM5 242 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 C1QL4Q86Z23 238 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 OR10A7Q8NGE5 316 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 TOMM40LQ969M1 308 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 RBM14Q96PK6 669 aaKnown RBP16.59■□□□□ 0.25
CLN3-219ENST00000565778 WNT10AQ9GZT5 417 aa16.59■□□□□ 0.25
CLN3-219ENST00000565778 TMEM30CPA0ZSE6 113 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 PTGES3LE9PB15 166 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 CD1AP06126 327 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 FAM106CPP0CH98 169 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 SSTR5P35346 364 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 TMEM95Q3KNT9 176 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 ABCA11PQ4W5N1 156 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 SLC16A12Q6ZSM3 486 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 CENPVQ7Z7K6 275 aaPredicted RBP16.58■□□□□ 0.24
CLN3-219ENST00000565778 CCDC107Q8WV48 283 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 DERL3Q96Q80 235 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 OCSTAMPQ9BR26 566 aa16.58■□□□□ 0.24
CLN3-219ENST00000565778 OR2F2O95006 317 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 OPN1MWP04001 364 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 OPN1MW2P0DN77 364 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 OPN1MW3P0DN78 364 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 MADCAM1Q13477 382 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 DOC2BQ14184 412 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 CDH26Q8IXH8 852 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 OR5AU1Q8NGC0 362 aa16.57■□□□□ 0.24
CLN3-219ENST00000565778 ARL11Q969Q4 196 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms