RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CNOT2Q9NZN8 540 aaKnown RBP11.89□□□□□ -0.51
CLN3-213ENST00000565047 ST3GAL6Q9Y274 331 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 MEIKINA0A087WXM9 373 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 A0A1W2PP11 408 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 EFCAB10A6NFE3 127 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 GEMIN2O14893 280 aaKnown RBP11.88□□□□□ -0.51
CLN3-213ENST00000565047 PIN1P1O15428 100 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 HTR3BO95264 441 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 IL1AP01583 271 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 OPN1MWP04001 364 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 OPN1MW2P0DN77 364 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 OPN1MW3P0DN78 364 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 KCNJ3P48549 501 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 RIPK1Q13546 671 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 ZNF565Q8N9K5 539 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 OR4D6Q8NGJ1 314 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 TFAP2CQ92754 450 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 DPCDQ9BVM2 203 aaPredicted RBP11.88□□□□□ -0.51
CLN3-213ENST00000565047 METTL9Q9H1A3 318 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 MMP28Q9H239 520 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 LIN7BQ9HAP6 207 aa11.88□□□□□ -0.51
CLN3-213ENST00000565047 ANKRD65E5RJM6 399 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 C15orf65H3BRN8 121 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 J3QR06 171 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 PPP3R1P63098 170 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 TMEM95Q3KNT9 176 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 C16orf82Q7Z2V1 217 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 C8orf59Q8N0T1 100 aaPredicted RBP11.87□□□□□ -0.51
CLN3-213ENST00000565047 NANOGP1Q8N7R0 232 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 OR10A7Q8NGE5 316 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 OR9G1Q8NH87 305 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 CREB3L1Q96BA8 519 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 RBM14Q96PK6 669 aaKnown RBP11.87□□□□□ -0.51
CLN3-213ENST00000565047 OR14A2Q96R54 314 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 ZNF184Q99676 751 aaPredicted RBP11.87□□□□□ -0.51
CLN3-213ENST00000565047 FAM192AQ9GZU8 254 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 IDI2-AS1Q9NZ38 188 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 ING4Q9UNL4 249 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 PSG11Q9UQ72 335 aa11.87□□□□□ -0.51
CLN3-213ENST00000565047 TRAV39A0A0B4J263 110 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 OOSP1A8MZH6 123 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 OR2F2O95006 317 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 BRS3P32247 399 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 SSTR5P35346 364 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 GLP1RP43220 463 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 PRRX1P54821 245 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 GP2P55259 537 aaKnown RBP11.86□□□□□ -0.51
CLN3-213ENST00000565047 DIAPH2-AS1Q14236 149 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 TCTEX1D4Q5JR98 221 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 KPRPQ5T749 579 aaPredicted RBP11.86□□□□□ -0.51
CLN3-213ENST00000565047 RNLSQ5VYX0 342 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 SLC16A12Q6ZSM3 486 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 LINC00596Q86U02 117 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 CDH26Q8IXH8 852 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 GAPTQ8N292 157 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 RFESDQ8TAC1 157 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 MRGPRDQ8TDS7 321 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 LEAP2Q969E1 77 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 DERL3Q96Q80 235 aa11.86□□□□□ -0.51
CLN3-213ENST00000565047 CHCHD3Q9NX63 227 aaKnown RBP11.86□□□□□ -0.51
CLN3-213ENST00000565047 RCC2Q9P258 522 aaKnown RBP11.86□□□□□ -0.51
CLN3-213ENST00000565047 NKX1-2Q9UD57 310 aaPredicted RBP11.86□□□□□ -0.51
CLN3-213ENST00000565047 A0A1W2PPI3 338 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 A0A1W2PPK0 400 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 TOR1AO14656 332 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 ZNF780AO75290 641 aaPredicted RBP11.85□□□□□ -0.51
CLN3-213ENST00000565047 FBXO24O75426 580 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 OR7C1O76099 320 aaPredicted RBP11.85□□□□□ -0.51
CLN3-213ENST00000565047 NFYBP25208 207 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 CEACAM3P40198 252 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 WNT4P56705 351 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 TAS2R43P59537 309 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 CD83Q01151 205 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 MED21Q13503 144 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 MPV17LQ2QL34 196 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 UNQ9370/PRO34162Q6UXP9 181 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 THNSL2Q86YJ6 484 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 LYG1Q8N1E2 194 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 CYYR1Q96J86 154 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 CITED2Q99967 270 aaPredicted RBP11.85□□□□□ -0.51
CLN3-213ENST00000565047 PAK1IP1Q9NWT1 392 aaPredicted RBP11.85□□□□□ -0.51
CLN3-213ENST00000565047 TGP01266 2768 aa11.85□□□□□ -0.51
CLN3-213ENST00000565047 IGHV3-7P01780 117 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 MT-ND4P03905 459 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 CSTBP04080 98 aaKnown RBP11.84□□□□□ -0.51
CLN3-213ENST00000565047 GTF2F2P13984 249 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 GZMHP20718 246 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 SERPINA2P20848 420 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 LOXL3P58215 753 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 BEAN1Q3B7T3 259 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 SLC22A6Q4U2R8 563 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 SAMD5Q5TGI4 173 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 FAM53AQ6NSI3 398 aaPredicted RBP11.84□□□□□ -0.51
CLN3-213ENST00000565047 ZNF497Q6ZNH5 498 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 AHSA2Q719I0 299 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 NDUFA11Q86Y39 141 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 C1QL4Q86Z23 238 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 BPIFB6Q8NFQ5 453 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 MRPS24Q96EL2 167 aaKnown RBP11.84□□□□□ -0.51
CLN3-213ENST00000565047 OR5M11Q96RB7 305 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms