RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ECM29Q5VYK3 1845 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 PALLDQ8WX93 1383 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 EHBP1L1Q8N3D4 1523 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 PHLPP1O60346 1717 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 RICTORQ6R327 1708 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 C3P01024 1663 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 DAPL1A0PJW8 107 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 TMEM8BA6NDV4 472 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 FOXI3A8MTJ6 420 aaPredicted RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 C17orf100A8MU93 164 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 LMO7DNF2Z398 122 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 G3V3Q6 166 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 MFNGO00587 321 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 GAPDHSO14556 408 aaPredicted RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 CLDN1O95832 211 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 MOSP00540 346 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 VTNP04004 478 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 MAS1P04201 325 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR12D1P0DN82 309 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 PVRP15151 417 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 GATA1P15976 413 aaPredicted RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 ORM2P19652 201 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR10J1P30954 320 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 GABRA3P34903 492 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR1D4P47884 311 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 VAMP7P51809 220 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 BACE1P56817 501 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 ZNF121P58317 390 aaPredicted RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 FMODQ06828 376 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 FAM53BQ14153 422 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 CTF1Q16619 201 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 C4orf26Q17RF5 130 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 LGALSLQ3ZCW2 172 aaPredicted RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 TNFAIP8L2Q6P589 184 aaPredicted RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 PAQR6Q6TCH4 344 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR4N5Q8IXE1 308 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR2L13Q8N349 312 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 PGBD5Q8N414 524 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 RYBPQ8N488 228 aaPredicted RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 KRTCAP2Q8N6L1 136 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 C5orf17Q8NAS9 161 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 GATD1Q8NB37 220 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 RNF149Q8NC42 400 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 DUSP18Q8NEJ0 188 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR13A1Q8NGR1 328 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR1J2Q8NGS2 313 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR2K2Q8NGT1 345 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 ZNF519Q8TB69 540 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 CD99L2Q8TCZ2 262 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR5P3Q8WZ94 311 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 DNAJC19Q96DA6 116 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 PLEKHF1Q96S99 279 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 RASL11BQ9BPW5 248 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 SAMD10Q9BYL1 202 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 SLC17A9Q9BYT1 436 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 CHIAQ9BZP6 476 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 SLIRPQ9GZT3 109 aaKnown RBP4.27□□□□□ -1.73
VPS35-205ENST00000563984 MED28Q9H204 178 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR2D2Q9H210 308 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 MS4A6AQ9H2W1 248 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 OR51I2Q9H344 312 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 HES4Q9HCC6 221 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 ASF1BQ9NVP2 202 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 IDI2-AS1Q9NZ38 188 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 RIMS3Q9UJD0 308 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 MMP17Q9ULZ9 603 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 BTRCQ9Y297 605 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 LOXL2Q9Y4K0 774 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 KDM5CP41229 1560 aa4.27□□□□□ -1.73
VPS35-205ENST00000563984 MYO5CQ9NQX4 1742 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 MROH1Q8NDA8 1641 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 A0A096LPK6 155 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 A0A0G2JMM0 328 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 A0A1W2PPB8 328 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 A0A1W2PRS3 328 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 DDTLA6NHG4 134 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 ZNF705GA8MUZ8 300 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 KIR3DP1A8MWS1 328 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 F8VVB4 439 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 F8VWA3 439 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 H0YL77 283 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 K7EPK0 472 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SAP18O00422 153 aaKnown RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 XRCC3O43542 346 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 TNFSF13O75888 250 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 CDRT1O95170 752 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SOX14O95416 240 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 CSN2P05814 226 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SP1P08047 785 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 AKAIN1P0CW23 69 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 CDK2P24941 298 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 RPA3P35244 121 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 LHX2P50458 406 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 OR12D2P58182 307 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SEC61A1P61619 476 aaKnown RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 UBA52P62987 128 aaKnown RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 SRPXP78539 464 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 MEF2BQ02080 365 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 SRYQ05066 204 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms