RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SPNS3Q6ZMD2 512 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 CRIM1Q9NZV1 1036 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 COLQQ9Y215 455 aaPredicted RBP11.35□□□□□ -0.59
CLN3-210ENST00000563874 SCAF4O95104 1147 aaKnown RBP11.35□□□□□ -0.59
CLN3-210ENST00000563874 F10P00742 488 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 TK1P04183 234 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 HOXA5P20719 270 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 AKR1C8PQ5T2L2 129 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 KIAA1456Q9P272 454 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 HS3ST3B1Q9Y662 390 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 URB1O60287 2271 aaKnown RBP11.35□□□□□ -0.59
CLN3-210ENST00000563874 ZNF816-ZNF321PA0A0X1KG74 233 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 A0A1B0GW64 132 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 WRBO00258 174 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 CYB5BO43169 146 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 COX6A1P12074 109 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 RPL23AP62750 156 aaKnown RBP11.34□□□□□ -0.59
CLN3-210ENST00000563874 HERPUD1Q15011 391 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 OR2B11Q5JQS5 317 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 RPS19BP1Q86WX3 136 aaKnown RBP11.34□□□□□ -0.59
CLN3-210ENST00000563874 C1QL4Q86Z23 238 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 C17orf78Q8N4C9 275 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 IL22RA1Q8N6P7 574 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 TMEM56Q96MV1 263 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 SIGLEC12Q96PQ1 595 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 SLC25A31Q9H0C2 315 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 TMEM56-RWDD3S4R434 201 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 TRAPPC6AO75865 159 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 RFPL3SP0C7P2 107 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 RAC3P60763 192 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 FAM180AQ6UWF9 173 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 CMTM1Q8IZ96 169 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 IMMP1LQ96LU5 166 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 NIPSNAP3BQ9BS92 247 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 FREM1Q5H8C1 2179 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 SLC22A20A6NK97 555 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 CBR3O75828 277 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 HLA-HP01893 362 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 MAS1LP35410 378 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 GPM6AP51674 278 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 SRPXP78539 464 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 EXT1Q16394 746 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 CPEB3Q8NE35 698 aaKnown RBP11.34□□□□□ -0.59
CLN3-210ENST00000563874 ABHD3Q8WU67 409 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 SPIN2AQ99865 258 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 SPIN2BQ9BPZ2 258 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 IL36GQ9NZH8 169 aa11.34□□□□□ -0.59
CLN3-210ENST00000563874 WDFY4Q6ZS81 3184 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 ZNF716A6NP11 495 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 TRGC2P03986 189 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 S100A2P29034 98 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 CDX1P47902 265 aaPredicted RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 TMEM267Q0VDI3 215 aaPredicted RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 THNSL2Q86YJ6 484 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 ZNF610Q8N9Z0 462 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 CPT1CQ8TCG5 803 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 UNKLQ9H9P5 680 aaKnown RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 CALHM2Q9HA72 323 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 GNG13Q9P2W3 67 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 A0A0G2JRQ6 117 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 RPL36A-HNRNPH2H7BZ11 118 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BKO60814 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 LY86O95711 162 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BJP06899 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 CCL4P13236 92 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 ZNF16P17020 682 aaPredicted RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BOP23527 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 EPHA8P29322 1005 aaPredicted RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BBP33778 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BDP58876 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BCP62807 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 OR8B8Q15620 311 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST2H2BEQ16778 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 NMSQ5H8A3 153 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 SLC25A24Q6NUK1 477 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 OR56B2PQ8NGI1 322 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 OR10D4PQ8NGN7 298 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 OR51H1Q8NH63 302 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 CLDND2Q8NHS1 167 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 PLPPR1Q8TBJ4 325 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BHQ93079 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 ZNF845Q96IR2 970 aaPredicted RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 PFDN5Q99471 154 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BNQ99877 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 HIST1H2BMQ99879 126 aa11.33□□□□□ -0.6
CLN3-210ENST00000563874 PHF7Q9BWX1 381 aaPredicted RBP11.33□□□□□ -0.6
CLN3-210ENST00000563874 A0A096LPE4 126 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 IGKV1-6A0A0C4DH72 117 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 A0A1W2PPZ6 126 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 ZFP92A6NM28 416 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 C4orf17Q53FE4 359 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 WIPI1Q5MNZ9 446 aaPredicted RBP11.32□□□□□ -0.6
CLN3-210ENST00000563874 WDR5BQ86VZ2 330 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 OR10D3Q8NH80 312 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 TVP23CQ96ET8 276 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 FGF23Q9GZV9 251 aaPredicted RBP11.32□□□□□ -0.6
CLN3-210ENST00000563874 SMDT1Q9H4I9 107 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 Q9N2K0 584 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 FAM86C1Q9NVL1 165 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms