RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 MRPL54Q6P161 138 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 SLC39A4Q6P5W5 647 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CBLN3Q6UW01 205 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TMEM207Q6UWW9 146 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TMEM182Q6ZP80 229 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 HOGA1Q86XE5 327 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 DOLPP1Q86YN1 238 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 APOBEC3FQ8IUX4 373 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 CMTM8Q8IZV2 173 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SLC39A11Q8N1S5 342 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SYS1Q8N2H4 156 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TMEM251Q8N6I4 163 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CSNK1A1LQ8N752 337 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 FAM86B1Q8N7N1 296 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TCEANCQ8N8B7 351 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 LRRC75AQ8NAA5 344 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR8G5Q8NG78 346 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR52B6Q8NGF0 335 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR4B1Q8NGF8 309 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR4D11Q8NGI4 311 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR51T1Q8NGJ9 327 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR9G4Q8NGQ1 327 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR2A12Q8NGT7 310 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR52E5Q8NH55 327 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR51Q1Q8NH59 317 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 LGALS14Q8TCE9 139 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 GPR119Q8TDV5 335 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BHQ93079 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 IL22RA2Q969J5 263 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 ESAMQ96AP7 390 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 GPR146Q96CH1 333 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 PIK3IP1Q96FE7 263 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HPDLQ96IR7 371 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CAPNS2Q96L46 248 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 LINC00615Q96LM1 132 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 YPEL4Q96NS1 127 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 AMDHD1Q96NU7 426 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TGM7Q96PF1 710 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CIB3Q96Q77 187 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 RAB40CQ96S21 281 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 ARHGDIGQ99819 225 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BNQ99877 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BMQ99879 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 MRPL57Q9BQC6 102 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 SLC25A21Q9BQT8 299 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 C20orf27Q9GZN8 174 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 PRO1933Q9H354 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SRMSQ9H3Y6 488 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TMEM27Q9HBJ8 222 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 RPS10P5Q9NQ39 176 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 EXOSC3Q9NQT5 275 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 CLN6Q9NWW5 311 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 MRPL16Q9NX20 251 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 COMMD9Q9P000 198 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 UQCR10Q9UDW1 63 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SHPKQ9UHJ6 478 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 DENND4AQ7Z401 1863 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SCN9AQ15858 1988 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TNS2Q63HR2 1409 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 LTBP4Q8N2S1 1624 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RGPD8O14715 1765 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 LAMB1P07942 1786 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 IGHV1-69-2A0A0G2JMI3 117 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 A0A1W2PPE3 182 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 PSMB11A5LHX3 300 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 MEIS3P1A6NDR6 274 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ZNF840PA6NDX5 716 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ARRDC5A6NEK1 342 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ANTXRLA6NF34 631 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 E7EQ34 232 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 F5H5P2 479 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 NME4O00746 187 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SLC31A1O15431 190 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SPRY1O43609 319 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 HCRTR1O43613 425 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 FCGR3BO75015 233 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 DUSP11O75319 330 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 ENTPD6O75354 484 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 CA11O75493 328 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 EEDO75530 441 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 FOXH1O75593 365 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 CEACAM4O75871 244 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 YIF1AO95070 293 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 GPR75O95800 540 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 IFNA1P01562 189 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 C1QAP02745 245 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 REG1AP05451 166 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 CA3P07451 260 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RHOCP08134 193 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 C8orf88P0DMB2 117 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 BCKDHAP12694 445 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 CTSEP14091 401 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 FABP4P15090 132 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 CXCL3P19876 107 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 PMCHP20382 165 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 GZMHP20718 246 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OMGP23515 440 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 FCARP24071 287 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 PSMB5P28074 263 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms