RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 OR8H1Q8NGG4 311 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 CD300LFQ8TDQ1 290 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 PPP1R1CQ8WVI7 109 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 RNASE6Q93091 150 aaKnown RBP6.38□□□□□ -1.39
VPS39-204ENST00000561818 SNX22Q96L94 193 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 DMRTA2Q96SC8 542 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 RTBDNQ9BSG5 229 aaPredicted RBP6.38□□□□□ -1.39
VPS39-204ENST00000561818 ARL6Q9H0F7 186 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 FXYD6Q9H0Q3 95 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 MS4A5Q9H3V2 200 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 PLEKHA2Q9HB19 425 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 PIPOXQ9P0Z9 390 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 KIF25Q9UIL4 384 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 ELF5Q9UKW6 265 aaPredicted RBP6.38□□□□□ -1.39
VPS39-204ENST00000561818 SESN1Q9Y6P5 492 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 SPEGQ15772 3267 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 APC2O95996 2303 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 TRAV24A0A0B4J272 114 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 A0A0G2JNJ9 132 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 NKX6-3A6NJ46 265 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 NUDT19A8MXV4 375 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 ERVH48-1M5A8F1 160 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 ITGB1BP1O14713 200 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 ARPC5O15511 151 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 NDUFA2O43678 99 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 ATP6V1G1O75348 118 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 MPC2O95563 127 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 GRPP07492 148 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 AGAP20933 346 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 VDAC1P21796 283 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 MPV17P39210 176 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 ID4P47928 161 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 RAB7AP51149 207 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 FABP6P51161 128 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 HTD2P86397 168 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 GNMTQ14749 295 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 OPCMLQ14982 345 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 HMGN3Q15651 99 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 Q3ZCU0 254 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 BEX5Q5H9J7 111 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 CLLU1Q5K131 121 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 LY6G6FQ5SQ64 297 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 GPR157Q5UAW9 335 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 Q6P435 159 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 PRSS54Q6PEW0 395 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 WDR82Q6UXN9 313 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 ZNF808Q8N4W9 903 aaPredicted RBP6.37□□□□□ -1.39
VPS39-204ENST00000561818 KCNRGQ8N5I3 272 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 NAXEQ8NCW5 288 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 OR2Z1Q8NG97 314 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 OR10A7Q8NGE5 316 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 OR52B4Q8NGK2 314 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 MRPL30Q8TCC3 161 aaKnown RBP6.37□□□□□ -1.39
VPS39-204ENST00000561818 TMEM171Q8WVE6 324 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 TOMM40LQ969M1 308 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 MRGPRFQ96AM1 343 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 CCDC120Q96HB5 630 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 MEGF10Q96KG7 1140 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 SLC5A7Q9GZV3 580 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 OR51B6Q9H340 312 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 PLEKHF2Q9H8W4 249 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 MED9Q9NWA0 146 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 Q9UFV3 132 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 ZNF230Q9UIE0 474 aaPredicted RBP6.37□□□□□ -1.39
VPS39-204ENST00000561818 TINAGQ9UJW2 476 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 JPT1Q9UK76 154 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 TNFSF18Q9UNG2 199 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 WDFY3Q8IZQ1 3526 aa6.37□□□□□ -1.39
VPS39-204ENST00000561818 INTS1Q8N201 2190 aaKnown RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 C3orf85A0A1B0GTC6 90 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 FAM25EA8MYX2 175 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 E5RGE8 158 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 SDCBPO00560 298 aaPredicted RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 HS3ST1O14792 307 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 MPPED1O15442 326 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 MLNRO43193 412 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 BCL2L11O43521 198 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 SERPINE2P07093 398 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 TPT1P13693 172 aaKnown RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 RPS2P15880 293 aaKnown RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 IL2RGP31785 369 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 SERPINF1P36955 418 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 KIR2DS2P43631 304 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 TNFAIP6P98066 277 aaPredicted RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 GTF3C1Q12789 2109 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 EFNB3Q15768 340 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 CR1LQ2VPA4 569 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 MYO7BQ6PIF6 2116 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 RNF144BQ7Z419 303 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 LDLRAD3Q86YD5 345 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 ZNF695Q8IW36 515 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 H1FOOQ8IZA3 346 aaPredicted RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 GCSAMQ8N6F7 178 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 ZNF680Q8NEM1 530 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 OR10V1Q8NGI7 309 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 LILRB4Q8NHJ6 448 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 STOML3Q8TAV4 291 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 SCARB1Q8WTV0 552 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms