RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 DNAJB11Q9UBS4 358 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DUX4Q9UBX2 424 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 ZNF107Q9UII5 783 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 ANAPC10Q9UM13 185 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 WIPI2Q9Y4P8 454 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 IGHV3OR15-7A0A075B7D8 119 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 IFNL4K9M1U5 179 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 SULT1A3P0DMM9 295 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 SULT1A4P0DMN0 295 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 PSG2P11465 335 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 LMO1P25800 156 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 CD80P33681 288 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 TAS2R19P59542 299 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DHODHQ02127 395 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 RBM39Q14498 530 aaKnown RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 PAN3Q58A45 887 aaKnown RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 FAM201AQ5SY85 155 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 SHEQ5VZ18 495 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 SFRP4Q6FHJ7 346 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 EIF4E3Q8N5X7 224 aaKnown RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 OR4S1Q8NGB4 309 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 NEK7Q8TDX7 302 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 ST6GALNAC5Q9BVH7 336 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DCAF16Q9NXF7 216 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 ZNF230Q9UIE0 474 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 LAMP3Q9UQV4 416 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 ROS1P08922 2347 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 IGHV1-69-2A0A0G2JMI3 117 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 A1L4Q6 167 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 MFSD2BA6NFX1 497 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 OR2AT4A6NND4 320 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 ZNF736B4DX44 427 aaPredicted RBP9.41□□□□□ -0.9
USP3-218ENST00000560202 MT-ND4P03905 459 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 CD3DP04234 171 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 AKAIN1P0CW23 69 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 DTYMKP23919 212 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 DNASE1P24855 282 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 PRDX2P32119 198 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 TLE4Q04727 773 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 SP5Q6BEB4 398 aaPredicted RBP9.41□□□□□ -0.9
USP3-218ENST00000560202 OR52W1Q6IF63 320 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 STEAP1BQ6NZ63 245 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 HOGA1Q86XE5 327 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 C1orf87Q8N0U7 546 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 CD177Q8N6Q3 437 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 CCL17Q92583 94 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 CACNG6Q9BXT2 260 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 RAB1BQ9H0U4 201 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 SEBOXQ9HB31 216 aaPredicted RBP9.41□□□□□ -0.9
USP3-218ENST00000560202 TMEM106BQ9NUM4 274 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 ZNF701Q9NV72 531 aaPredicted RBP9.41□□□□□ -0.9
USP3-218ENST00000560202 ZNF222Q9UK12 451 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 ICE1Q9Y2F5 2266 aa9.41□□□□□ -0.9
USP3-218ENST00000560202 HRNRQ86YZ3 2850 aaPredicted RBP9.4□□□□□ -0.9
USP3-218ENST00000560202 IGKV1D-17A0A075B6S4 117 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 NAP1L6A6NFF2 107 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 OOEPA6NGQ2 149 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 TMEM178BH3BS89 294 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 PSPNO60542 156 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 SCO1O75880 301 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 ZNF205O95201 554 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 TFF1P04155 84 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 CD74P04233 296 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 FCGR3AP08637 254 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 BTCP35070 178 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 FAUP35544 74 aaKnown RBP9.4□□□□□ -0.9
USP3-218ENST00000560202 GABRA2P47869 451 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 COL10A1Q03692 680 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 MICBQ29980 383 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 TEX36Q5VZQ5 186 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 FAAP20Q6NZ36 180 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 HSD17B13Q7Z5P4 300 aaPredicted RBP9.4□□□□□ -0.9
USP3-218ENST00000560202 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.4□□□□□ -0.9
USP3-218ENST00000560202 DEFB108BQ8NET1 73 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 BEST4Q8NFU0 473 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 OR4D10Q8NGI6 311 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 OR4C16Q8NGL9 310 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 MAFIPQ8WZ33 124 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 CHST6Q9GZX3 395 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 CHMP1AQ9HD42 196 aaPredicted RBP9.4□□□□□ -0.9
USP3-218ENST00000560202 PFDN2Q9UHV9 154 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 METRNQ9UJH8 293 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 EDARQ9UNE0 448 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 PRELID3BQ9Y3B1 194 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 COL12A1Q99715 3063 aa9.4□□□□□ -0.9
USP3-218ENST00000560202 A8MXK9 166 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 SMLR1H3BR10 107 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 M0QYG6 137 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 RAB3DO95716 219 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 NAPSAO96009 420 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 COX6B1P14854 86 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 MUC1P15941 1255 aaPredicted RBP9.39□□□□□ -0.91
USP3-218ENST00000560202 AMY2BP19961 511 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 MDH2P40926 338 aaKnown RBP9.39□□□□□ -0.91
USP3-218ENST00000560202 HFEQ30201 348 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 LGALSLQ3ZCW2 172 aaPredicted RBP9.39□□□□□ -0.91
USP3-218ENST00000560202 OR11H7Q8NGC8 314 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 OR4K15Q8NH41 348 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 OR56B4Q8NH76 319 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 NEU4Q8WWR8 484 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms