RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FAM185AQ8N0U4 392 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 PP6455Q8WZ26 134 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 EXTL1Q92935 676 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 PCGF1Q9BSM1 259 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 UBE2G2P60604 165 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 HYAL1Q12794 435 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 FIP1L1Q6UN15 594 aaKnown RBP9.8□□□□□ -0.84
LDLR-208ENST00000558518 CALHM1Q8IU99 346 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 LHX4Q969G2 390 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 TMEM204Q9BSN7 226 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 MMP17Q9ULZ9 603 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 TMED3Q9Y3Q3 217 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 ADAMTS9Q9P2N4 1935 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 IGKV1D-13A0A0B4J2D9 117 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 UBE2L5PA0A1B0GUS4 154 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 GALR2O43603 387 aaPredicted RBP9.79□□□□□ -0.84
LDLR-208ENST00000558518 WDR1O75083 606 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 IGKV1-13P0DP09 117 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 ZNF32P17041 273 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 FAM3BP58499 235 aaPredicted RBP9.79□□□□□ -0.84
LDLR-208ENST00000558518 SSTP61278 116 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 COL10A1Q03692 680 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 ZP4Q12836 540 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 TMPRSS7Q7RTY8 843 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 ZNF100Q8IYN0 542 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 ZNF611Q8N823 705 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 HIST1H2AAQ96QV6 131 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 CRISPLD2Q9H0B8 497 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 IL17BQ9UHF5 180 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 PPP5D1E7EU14 171 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 SCRG1O75711 98 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 GPM6AP51674 278 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 CFHR1Q03591 330 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 OR4F5Q8NH21 305 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 RHBDD1Q8TEB9 315 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 OR4F4Q96R69 305 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 SPIN2AQ99865 258 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 SPIN2BQ9BPZ2 258 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 SLC39A9Q9NUM3 307 aa9.79□□□□□ -0.84
LDLR-208ENST00000558518 IGHV1OR21-1A0A087WYE8 117 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 CEACAM18A8MTB9 384 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 H7BYZ3 331 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 EREGO14944 169 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 PAX6P26367 422 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 FASLGP48023 281 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 TGFBR3Q03167 851 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 CNN3Q15417 329 aaKnown RBP9.78□□□□□ -0.84
LDLR-208ENST00000558518 NCR3LG1Q68D85 454 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 C16orf82Q7Z2V1 217 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 ANKRD37Q7Z713 158 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 OR6X1Q8NH79 312 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 MRGPRX4Q96LA9 322 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 HS3ST6Q96QI5 342 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 TRDCB7Z8K6 153 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 IFI6P09912 130 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 ZNF25P17030 456 aaPredicted RBP9.78□□□□□ -0.84
LDLR-208ENST00000558518 PI4KAP42356 2102 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 GTF3C1Q12789 2109 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 SHHQ15465 462 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.78□□□□□ -0.84
LDLR-208ENST00000558518 SLC16A14Q7RTX9 510 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 CLDND2Q8NHS1 167 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 GATAD1Q8WUU5 269 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 PLPPR2Q96GM1 343 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 RBKSQ9H477 322 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 MYOTQ9UBF9 498 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 RNF150Q9ULK6 438 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 MUC22E2RYF6 1773 aaPredicted RBP9.78□□□□□ -0.84
LDLR-208ENST00000558518 TUSC2O75896 110 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 ECI1P42126 302 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 HNRNPKP61978 463 aaKnown RBP eCLIP9.78□□□□□ -0.844e-6■■■■□ 21.9
LDLR-208ENST00000558518 MRPS21P82921 87 aaKnown RBP9.78□□□□□ -0.84
LDLR-208ENST00000558518 ZNF92Q03936 586 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 ENDOGQ14249 297 aaKnown RBP9.78□□□□□ -0.84
LDLR-208ENST00000558518 ZNF664Q8N3J9 261 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 D2HGDHQ8N465 521 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 OR4X1Q8NH49 305 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 LYPD6BQ8NI32 183 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 IL22RA2Q969J5 263 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 MVB12AQ96EY5 273 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 C18orf12Q96KH6 178 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 CACNG5Q9UF02 275 aa9.78□□□□□ -0.84
LDLR-208ENST00000558518 ERRFI1Q9UJM3 462 aaPredicted RBP9.78□□□□□ -0.84
LDLR-208ENST00000558518 A6NNC1 897 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 CD300LBA8K4G0 201 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 ZFAND5O76080 213 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 CLDN1O95832 211 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 PSG2P11465 335 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 IGFBP4P22692 258 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 GALNSP34059 522 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 WNT5AP41221 380 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 FAM131CQ96AQ9 280 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 GNPNAT1Q96EK6 184 aaPredicted RBP9.77□□□□□ -0.84
LDLR-208ENST00000558518 FBLN5Q9UBX5 448 aa9.77□□□□□ -0.84
LDLR-208ENST00000558518 CRYAAP02489 173 aa9.77□□□□□ -0.85
LDLR-208ENST00000558518 FGF7P21781 194 aa9.77□□□□□ -0.85
LDLR-208ENST00000558518 TAS2R60P59551 318 aa9.77□□□□□ -0.85
LDLR-208ENST00000558518 C1orf53Q5VUE5 145 aa9.77□□□□□ -0.85
LDLR-208ENST00000558518 OR10A7Q8NGE5 316 aa9.77□□□□□ -0.85
LDLR-208ENST00000558518 ABCA1O95477 2261 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms