RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 COL8A2P25067 703 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 MLF1P58340 268 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 SLC16A14Q7RTX9 510 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 ARV1Q9H2C2 271 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 ROS1P08922 2347 aa10.62□□□□□ -0.71
LDLR-205ENST00000557933 ARGFXA6NJG6 315 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 SOX15O60248 233 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 TRAPPC6AO75865 159 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 METTL15P1P0C7V9 234 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 SRYQ05066 204 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 TESK1Q15569 626 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 OR4D5Q8NGN0 318 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 SPTSSAQ969W0 71 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 RBMXL1Q96E39 390 aaKnown RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 UCK1Q9HA47 277 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 FOXD3Q9UJU5 478 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 CHCHD2Q9Y6H1 151 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 ZNF705GA8MUZ8 300 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 BCL3P20749 454 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 GPM6AP51674 278 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 ZNF133P52736 654 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 MALLQ13021 153 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 USF2Q15853 346 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 HIST3H3Q16695 136 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 RHBDD2Q6NTF9 364 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 TMPRSS7Q7RTY8 843 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 ZIC4Q8N9L1 334 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 DKKL1Q9UK85 242 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 GAB2Q9UQC2 676 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 ZNF729A6NN14 1252 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 NXPH1P58417 271 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 HIST2H3PS2Q5TEC6 136 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 PEAR1Q5VY43 1037 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 FAM53AQ6NSI3 398 aaPredicted RBP10.61□□□□□ -0.71
LDLR-205ENST00000557933 SSX9Q7RTT3 188 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 EXTL1Q92935 676 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 YPEL4Q96NS1 127 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 SYT3Q9BQG1 590 aa10.61□□□□□ -0.71
LDLR-205ENST00000557933 A0A1W2PQM1 296 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 TCN2P20062 427 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 PAX6P26367 422 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 APLNRP35414 380 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 FOXG1P55316 489 aaPredicted RBP10.6□□□□□ -0.71
LDLR-205ENST00000557933 ERVS71-1P61550 626 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 HERPUD1Q15011 391 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 DAZAP2Q15038 168 aaPredicted RBP10.6□□□□□ -0.71
LDLR-205ENST00000557933 CEACAM16Q2WEN9 425 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 HIKESHIQ53FT3 197 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 MAML2Q8IZL2 1156 aaPredicted RBP10.6□□□□□ -0.71
LDLR-205ENST00000557933 ABHD3Q8WU67 409 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 ZNF845Q96IR2 970 aaPredicted RBP10.6□□□□□ -0.71
LDLR-205ENST00000557933 ATG101Q9BSB4 218 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 DMRT1Q9Y5R6 373 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 CXCL13O43927 109 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 CD200P41217 278 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 LSM6P62312 80 aaKnown RBP10.6□□□□□ -0.71
LDLR-205ENST00000557933 PSG4Q00888 419 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 IL13RA2Q14627 380 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 C20orf204Q6ZNR8 217 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 C17orf82Q86X59 251 aaPredicted RBP10.6□□□□□ -0.71
LDLR-205ENST00000557933 MOB3AQ96BX8 217 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 RPUSD4Q96CM3 377 aaKnown RBP10.6□□□□□ -0.71
LDLR-205ENST00000557933 GALNT14Q96FL9 552 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 FAM210BQ96KR6 192 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 RPRMQ9NS64 109 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 LRFN1Q9P244 771 aa10.6□□□□□ -0.71
LDLR-205ENST00000557933 A0A0U1RQV5 110 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 NPIPB13A6NJU9 1138 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 CEBPZOSA8MTT3 80 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 NPIPB4C9JG80 1138 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 MMP7P09237 267 aaPredicted RBP10.59□□□□□ -0.71
LDLR-205ENST00000557933 RFPL3SP0C7P2 107 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 GLB1P16278 677 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 SELEP16581 610 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 ADIRFQ15847 76 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 SPINK9Q5DT21 86 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 Q6ZRM9 215 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 DPPA2Q7Z7J5 298 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 IL22RA1Q8N6P7 574 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 OR5L2Q8NGL0 311 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 GATAD1Q8WUU5 269 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 SGCZQ96LD1 299 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 TMEM222Q9H0R3 208 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 GFOD1Q9NXC2 390 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 TREM2Q9NZC2 230 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 STRAPQ9Y3F4 350 aaKnown RBP10.59□□□□□ -0.71
LDLR-205ENST00000557933 DMXL1Q9Y485 3027 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 MED12LQ86YW9 2145 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 A0A1B0GUS0 222 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 TRDCB7Z8K6 153 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 EGR1P18146 543 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 CCL7P80098 99 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 ZNF266Q14584 549 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 ZNF100Q8IYN0 542 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 SELENOHQ8IZQ5 122 aaKnown RBP10.59□□□□□ -0.71
LDLR-205ENST00000557933 HIST3H2BBQ8N257 126 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 OIT3Q8WWZ8 545 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 TVP23CQ96ET8 276 aa10.59□□□□□ -0.71
LDLR-205ENST00000557933 PACRGQ96M98 296 aaPredicted RBP10.59□□□□□ -0.71
LDLR-205ENST00000557933 ELOVL1Q9BW60 279 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms