RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 SYNMO15061 1565 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 NCOA1Q15788 1441 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CD109Q6YHK3 1445 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 RIMS2Q9UQ26 1411 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TRAV8-6A0A0B4J262 113 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 IGHV5-51A0A0C4DH38 117 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CENPVL3A0A0U1RRI6 287 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 NKX2-6A6NCS4 301 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SMIM9A6NGZ8 99 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ZNF233A6NK53 670 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CLDN24A6NM45 220 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 F5H5K5 113 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 M0QZK8 103 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 PHYHO14832 338 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 AZIN1O14977 448 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 NDUFA2O43678 99 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SERPINB7O75635 380 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SOX14O95416 240 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CD74P04233 296 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CST2P09228 141 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 NBEAP1P0C6P0 100 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 LINC00614P0C842 121 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TLX1NBP0CAT3 122 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SCGB1A1P11684 91 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ELK1P19419 428 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 GRPRP30550 384 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 PYCR1P32322 319 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 MPIP34949 423 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 POLR2IP36954 125 aaKnown RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 PMELP40967 661 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TTPAP49638 278 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ERFP50548 548 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 GFERP55789 205 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TCL1AP56279 114 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 RAB25P57735 213 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 AP1S1P61966 158 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CRADDP78560 199 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CDK5Q00535 292 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 IFITM3Q01628 133 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 OR2F1Q13607 317 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 EDDM3AQ14507 147 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TSNQ15631 228 aaKnown RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 HIST3H3Q16695 136 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CLEC12BQ2HXU8 276 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CDNFQ49AH0 187 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 C6orf99Q4VX62 202 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 LIN52Q52LA3 116 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SYT6Q5T7P8 510 aaPredicted RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CASP12Q6UXS9 341 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TMEM144Q7Z5S9 345 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 DHFR2Q86XF0 187 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CLVS1Q8IUQ0 354 aaPredicted RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 PCP2Q8IVA1 136 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SPICQ8N5J4 248 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CLDN22Q8N7P3 220 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TMEM161BQ8NDZ6 487 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 OR52E4Q8NGH9 312 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 OR52P1PQ8NH57 321 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 OR51Q1Q8NH59 317 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 OR10G6Q8NH81 332 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 OR10J5Q8NHC4 309 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 RNASE11Q8TAA1 199 aaKnown RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 STOML3Q8TAV4 291 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 HAVCR2Q8TDQ0 301 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 RNF138Q8WVD3 245 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 EEF1AKMT1Q8WVE0 214 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 GHSRQ92847 366 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ZMYND19Q96E35 227 aaPredicted RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ZHX1-C8orf76Q96EF9 292 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 MRAP2Q96G30 205 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SFRP2Q96HF1 295 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 FAM210BQ96KR6 192 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ZIM3Q96PE6 472 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 OR2A5Q96R48 311 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CAMK2N2Q96S95 79 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 PECRQ9BY49 303 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SLC25A39Q9BZJ4 359 aaPredicted RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 SLC19A3Q9BZV2 496 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 BOLA2Q9H3K6 86 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 WFDC1Q9HC57 220 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 HEBP1Q9NRV9 189 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 VPS29Q9UBQ0 182 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ENOPH1Q9UHY7 261 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 NEU3Q9UQ49 428 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 TP53TG1Q9Y2A0 90 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 LSM5Q9Y4Y9 91 aaKnown RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ORC6Q9Y5N6 252 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ALG5Q9Y673 324 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 DNMT1P26358 1616 aaKnown RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 ZBED9Q6R2W3 1325 aa2.12□□□□□ -2.07
TRAV28-201ENST00000557548 CHD2O14647 1828 aaKnown RBP2.12□□□□□ -2.07
TRAV28-201ENST00000557548 MARF1Q9Y4F3 1742 aaKnown RBP2.11□□□□□ -2.07
TRAV28-201ENST00000557548 MED1Q15648 1581 aaPredicted RBP2.11□□□□□ -2.07
TRAV28-201ENST00000557548 CEP170BQ9Y4F5 1589 aaPredicted RBP2.11□□□□□ -2.07
TRAV28-201ENST00000557548 TRBV6-6A0A0A6YYG2 114 aa2.11□□□□□ -2.07
TRAV28-201ENST00000557548 IGHV5-10-1A0A0J9YXX1 117 aa2.11□□□□□ -2.07
TRAV28-201ENST00000557548 A0A1B0GVX0 72 aa2.11□□□□□ -2.07
TRAV28-201ENST00000557548 OR6C6A6NF89 314 aa2.11□□□□□ -2.07
TRAV28-201ENST00000557548 ZNF705GA8MUZ8 300 aaPredicted RBP2.11□□□□□ -2.07
TRAV28-201ENST00000557548 KRBOX1C9JBD0 128 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms